View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10865_high_10 (Length: 249)
Name: NF10865_high_10
Description: NF10865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865_high_10 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 2923973 - 2924212
Alignment:
| Q |
1 |
catgctcaaaatatgatctccagcttccagaagtgtaatttttactaaatctttgaccccaggatataaatggactaaatcctcgttgacgaagtcatga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2923973 |
catgctcaaaatatgatctccagcttccagaagtgtaatttttactaaatctttgaccccaggatataaatggactaaatcctcgttgacgaagtcatga |
2924072 |
T |
|
| Q |
101 |
agtgaagctgcgaactccactccagttggccctcctccaacaatagcaaaatgaagaattctcttcttttcttcctcacttacagcaggcaaattcgctc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
2924073 |
agtgaagctgcgaactccactccagttggccctcctccaacaatagcaaaatgaagaattctcttcttttcttcctcgcttacatcaggcaaattcgctc |
2924172 |
T |
|
| Q |
201 |
tctcgaagcagtcaataaccgttcttctaatcttctgtgc |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2924173 |
tctcgaagcagtcaataaccgttcttctaatcttctgtgc |
2924212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 36126911 - 36126672
Alignment:
| Q |
1 |
catgctcaaaatatgatctccagcttccagaagtgtaatttttactaaatctttgaccccaggatataaatggactaaatcctcgttgacgaagtcatga |
100 |
Q |
| |
|
||||||||| |||||| ||||||| |||| || || ||||| ||||||||||| |||||||| ||||| | ||| |||||||| |||| || |||||| |
|
|
| T |
36126911 |
catgctcaagatatgacctccagcctccaagagcgtgattttaactaaatcttttaccccagggtataatttgaccaaatcctcactgacaaaatcatga |
36126812 |
T |
|
| Q |
101 |
agtgaagctgcgaactccactccagttggccctcctccaacaatagcaaaatgaagaattctcttcttttcttcctcacttacagcaggcaaattcgctc |
200 |
Q |
| |
|
|||| ||||| ||||| ||||||||||| || |||||||||||||||||||||||||||||||| | ||||| ||||| ||| ||||||| | |||| |
|
|
| T |
36126811 |
agtgcggctgcaaactctactccagttggaccacctccaacaatagcaaaatgaagaattctctttctctcttcatcactcacactaggcaaacttgctc |
36126712 |
T |
|
| Q |
201 |
tctcgaagcagtcaataaccgttcttctaatcttctgtgc |
240 |
Q |
| |
|
|||| |||| |||||| || |||||||||||||| ||||| |
|
|
| T |
36126711 |
tctcaaagctgtcaattacagttcttctaatcttttgtgc |
36126672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University