View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10865_high_4 (Length: 365)
Name: NF10865_high_4
Description: NF10865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865_high_4 |
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| [»] scaffold0057 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 46844873 - 46844530
Alignment:
| Q |
1 |
atcaagcactttgatataagatttctgaggattatttcatattctaagtccattgaagcaaaggtcaaattgtttttgtttaggtggaattatgtcacat |
100 |
Q |
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| T |
46844873 |
atcaagcactttgatataagatttctgaggattatttcatattctaagtccattgaagcaaaggtcaaattgtttttgtttaggtggaattatgtcacat |
46844774 |
T |
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| Q |
101 |
actcaatcatcgttagcttccaatttaggcatcttttgtgttatataggcatcacgtcctccaacaacatcctctggtcacggcattcatggctgcaaaa |
200 |
Q |
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| T |
46844773 |
actcaatcatccttagcttccaatttaggcatctt--gtgctatataggcatcacgtcctccaacaacatcctctggtcacggcattcatggctgcaaaa |
46844676 |
T |
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| Q |
201 |
tgccatctcacccctgcaatgcaataatgcaactaggttcaagatctcatggtattcactatcattccttcaaggaatcgttctaattctaatcggacac |
300 |
Q |
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| T |
46844675 |
tgccatctcacccctgcaatgcaataatgcaactaggttcaagatctcatggtattcactatcattccttcaaggaatcggtctaattctaatcggacac |
46844576 |
T |
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| Q |
301 |
aaattagcaaatcatactttcctttgatgtaataagacagacacgg |
346 |
Q |
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| T |
46844575 |
aaattagcaaattatactttcctttgatgtaataagacagacacgg |
46844530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0057
Description:
Target: scaffold0057; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 157 - 214
Target Start/End: Original strand, 48929 - 48986
Alignment:
| Q |
157 |
tcctccaacaacatcctctggtcacggcattcatggctgcaaaatgccatctcacccc |
214 |
Q |
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| T |
48929 |
tcctccaacagtttcctctggttacggcattcagggttgcaaaatgccatctcacccc |
48986 |
T |
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