View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10865_high_5 (Length: 365)

Name: NF10865_high_5
Description: NF10865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10865_high_5
NF10865_high_5
[»] chr7 (8 HSPs)
chr7 (34-202)||(22622675-22622844)
chr7 (35-201)||(23340474-23340639)
chr7 (255-352)||(24759474-24759571)
chr7 (259-328)||(1971096-1971165)
chr7 (253-327)||(43903418-43903493)
chr7 (248-313)||(10250052-10250115)
chr7 (34-95)||(23342880-23342942)
chr7 (253-314)||(13761779-13761840)
[»] chr5 (4 HSPs)
chr5 (254-346)||(4077837-4077929)
chr5 (255-352)||(40946710-40946807)
chr5 (260-352)||(16352105-16352197)
chr5 (256-346)||(29344762-29344852)
[»] chr8 (5 HSPs)
chr8 (254-342)||(38681136-38681224)
chr8 (255-352)||(26955412-26955509)
chr8 (264-342)||(38682400-38682477)
chr8 (253-352)||(8022722-8022821)
chr8 (255-314)||(42313947-42314006)
[»] chr2 (5 HSPs)
chr2 (254-352)||(26449092-26449190)
chr2 (253-352)||(22145619-22145718)
chr2 (254-342)||(38403354-38403442)
chr2 (254-314)||(4768477-4768537)
chr2 (255-327)||(31409704-31409776)
[»] chr6 (3 HSPs)
chr6 (259-352)||(23073412-23073505)
chr6 (258-327)||(8840653-8840722)
chr6 (255-352)||(18645950-18646047)
[»] chr3 (5 HSPs)
chr3 (255-352)||(52126885-52126982)
chr3 (255-328)||(29129130-29129203)
chr3 (253-352)||(43399448-43399547)
chr3 (260-328)||(53689246-53689314)
chr3 (253-352)||(19009628-19009726)
[»] chr1 (4 HSPs)
chr1 (255-328)||(29836239-29836312)
chr1 (255-328)||(40981593-40981666)
chr1 (254-329)||(50290432-50290507)
chr1 (253-281)||(39076268-39076296)
[»] chr4 (16 HSPs)
chr4 (255-327)||(14210419-14210491)
chr4 (255-327)||(14211388-14211460)
chr4 (255-327)||(14212339-14212411)
chr4 (255-327)||(14213308-14213380)
chr4 (255-327)||(14214276-14214348)
chr4 (255-327)||(14215245-14215317)
chr4 (255-327)||(14218116-14218188)
chr4 (255-327)||(14219086-14219158)
chr4 (255-327)||(14220055-14220127)
chr4 (255-327)||(14221006-14221078)
chr4 (255-327)||(14221975-14222047)
chr4 (255-327)||(14222944-14223016)
chr4 (255-327)||(14209468-14209540)
chr4 (255-327)||(14216214-14216286)
chr4 (255-327)||(14217165-14217237)
chr4 (255-352)||(30176040-30176137)


Alignment Details
Target: chr7 (Bit Score: 158; Significance: 5e-84; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 34 - 202
Target Start/End: Complemental strand, 22622844 - 22622675
Alignment:
Q  34 tgttaagaagctaaatagaacatcaacaaagtttttt-ctgcttcagcatacatgactttgttactctcttcattcaccacaagcttgaatggcacatac 132  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22622844 tgttaagaagctaaatagaacatcaacaaagtttttttctgcttcagcatacatgactttgttactctcttcattcaccacaagcttgaatggcacatac 22622745  T
Q  133 gcctcctctgtttgggtagaagtcatggaagcaaatagcaactagcaaacgatgtttggaattttatatt 202  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  22622744 gcctcctctgtttgggtagaagccatggaagcaaatagcaactagcaaacgatgtttggaattttatatt 22622675  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 35 - 201
Target Start/End: Original strand, 23340474 - 23340639
Alignment:
Q  35 gttaagaagctaaatagaacatcaacaaagttttttc-tgcttcagcatacatgactttgttactctcttcattcaccacaagcttgaatggcacatacg 133  Q
    |||||||||||||||||||||||| | ||||   ||| |||||||||| | ||||||||||| |||||||  ||||||||| | || |||||| || |      
T  23340474 gttaagaagctaaatagaacatcatcgaagtccattcctgcttcagcaaatatgactttgttgctctcttggttcaccacatgtttcaatggcgcagag- 23340572  T
Q  134 cctcctctgtttgggtagaa-gtcatggaagcaaatagcaactagcaaacgatgtttggaattttatat 201  Q
      || |||||||| |||||| | ||||| ||||| |||||||||||||||||||| |||||||||||||    
T  23340573 --tcttctgtttgagtagaaagccatggcagcaagtagcaactagcaaacgatgtatggaattttatat 23340639  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 255 - 352
Target Start/End: Original strand, 24759474 - 24759571
Alignment:
Q  255 atcctttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaaatttttggctccaattcgttctggccgttagattaatct 352  Q
    |||||||||||||||||||||||||||    || ||||||| |  |||||||||||||| ||||||||||||| ||||||  |||||| |||||||||    
T  24759474 atcctttatatctaatcctagcaaacatgtttaccctaatttcttaaccctaatcctaagtttttggctccaaatcgttccagccgttggattaatct 24759571  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 259 - 328
Target Start/End: Original strand, 1971096 - 1971165
Alignment:
Q  259 tttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaaatttttggctccaat 328  Q
    |||||||||||||||||||||||  | || ||||||| |||||||||||  |||  ||||||||||||||    
T  1971096 tttatatctaatcctagcaaacatgcttaccctaatttccaaaccctaaatctacttttttggctccaat 1971165  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 253 - 327
Target Start/End: Original strand, 43903418 - 43903493
Alignment:
Q  253 ttatcctttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaa-atttttggctccaa 327  Q
    ||||||||||||||||||  |||||||||  |||| ||||||||| ||||||||| | |||  |||||||||||||    
T  43903418 ttatcctttatatctaatgttagcaaacatgcctaccctaattgcaaaaccctaaacttaatttttttggctccaa 43903493  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 313
Target Start/End: Complemental strand, 10250115 - 10250052
Alignment:
Q  248 atcctttatcctttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaa 313  Q
    ||||||||||||||||||||||||||||| |||| ||| | | |||||  | ||||||||||||||    
T  10250115 atcctttatcctttatatctaatcctagctaacaatcccaccttaatt--ctaaccctaatcctaa 10250052  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 95
Target Start/End: Original strand, 23342880 - 23342942
Alignment:
Q  34 tgttaagaagctaaatagaacatcaacaaagt-tttttctgcttcagcatacatgactttgtt 95  Q
    ||||||||||||||| |||||||| |||||||  ||| ||||||||||| ||| |||||||||    
T  23342880 tgttaagaagctaaacagaacatccacaaagtcctttcctgcttcagcaaacaagactttgtt 23342942  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 314
Target Start/End: Original strand, 13761779 - 13761840
Alignment:
Q  253 ttatcctttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaaa 314  Q
    |||||||||||||||||||||||||||||  |  | |||||||||  || ||||||||||||    
T  13761779 ttatcctttatatctaatcctagcaaacatgcaaaccctaattgcataaacctaatcctaaa 13761840  T

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Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 254 - 346
Target Start/End: Original strand, 4077837 - 4077929
Alignment:
Q  254 tatcctttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaaatttttggctccaattcgttctggccgttagat 346  Q
    ||||||||||||||||||||||||||||  | || ||||||||||||||||||||||| | ||||||||||||| ||||| ||||||||||||    
T  4077837 tatcctttatatctaatcctagcaaacatgcttatcctaattgccaaaccctaatccttattttttggctccaaatcgttatggccgttagat 4077929  T

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Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 255 - 352
Target Start/End: Original strand, 40946710 - 40946807
Alignment:
Q  255 atcctttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaaatttttggctccaattcgttctggccgttagattaatct 352  Q
    |||||||||||||||||||||||||||    || ||||||||||||||||||||| ||| ||||||||||||| || ||||||||||||||| |||||    
T  40946710 atcctttatatctaatcctagcaaacatgtttaccctaattgccaaaccctaatcttaattttttggctccaaatcattctggccgttagataaatct 40946807  T

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Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 260 - 352
Target Start/End: Complemental strand, 16352197 - 16352105
Alignment:
Q  260 ttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaaatttttggctccaattcgttctggccgttagattaatct 352  Q
    ||||||||||||||||||||||  | || ||||||||||||||||||||||| | ||||||||||||| ||||| |||||||||||| |||||    
T  16352197 ttatatctaatcctagcaaacatgcttaccctaattgccaaaccctaatccttattttttggctccaaatcgttatggccgttagatgaatct 16352105  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 256 - 346
Target Start/End: Original strand, 29344762 - 29344852
Alignment:
Q  256 tcctttatatctaatcctagcaaacactcctaacc-taattgccaaaccctaatcctaaatttttggctccaattcgttctggccgttagat 346  Q
    ||||||||||||||||||||||  || | | |||| || ||| |||||||||||| ||| ||||| ||||||| ||||||||||||||||||    
T  29344762 tcctttatatctaatcctagcag-caatgcaaaccatatttgtcaaaccctaatcttaattttttagctccaaatcgttctggccgttagat 29344852  T

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Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 254 - 342
Target Start/End: Original strand, 38681136 - 38681224
Alignment:
Q  254 tatcctttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaaatttttggctccaattcgttctggccgtt 342  Q
    ||||||||||||||||||||||||||||  | || |||| |||| ||||||||||||||| ||||||||||||| ||||||||||||||    
T  38681136 tatcctttatatctaatcctagcaaacatgcttaccctatttgctaaaccctaatcctaattttttggctccaaatcgttctggccgtt 38681224  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 255 - 352
Target Start/End: Original strand, 26955412 - 26955509
Alignment:
Q  255 atcctttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaaatttttggctccaattcgttctggccgttagattaatct 352  Q
    |||||||||||||||| ||||||||||    || ||||||||||||||||||||| ||| |||||| |||||| || ||||| ||||||||| |||||    
T  26955412 atcctttatatctaattctagcaaacatgtttaccctaattgccaaaccctaatcttaattttttgactccaaatcattctgaccgttagataaatct 26955509  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 264 - 342
Target Start/End: Original strand, 38682400 - 38682477
Alignment:
Q  264 atctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaaatttttggctccaattcgttctggccgtt 342  Q
    ||||||||||||||||||  | || |||| |||| ||||||||||||||| ||||||||||||| ||||||||||||||    
T  38682400 atctaatcctagcaaacatgcttacccta-ttgctaaaccctaatcctaattttttggctccaaatcgttctggccgtt 38682477  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 253 - 352
Target Start/End: Original strand, 8022722 - 8022821
Alignment:
Q  253 ttatcctttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaaatttttggctccaattcgttctggccgttagattaatct 352  Q
    |||||||||||||||||||||||||   |    || ||||||| || |||||||||||||| ||||||||||||| | ||||  ||||||||||||||||    
T  8022722 ttatcctttatatctaatcctagcagtaatgtttaccctaatttcctaaccctaatcctaagtttttggctccaaattgttccagccgttagattaatct 8022821  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 255 - 314
Target Start/End: Complemental strand, 42314006 - 42313947
Alignment:
Q  255 atcctttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaaa 314  Q
    ||||||||||||||||||| |||||||  |  | |||||||||| |||||||||||||||    
T  42314006 atcctttatatctaatcctggcaaacatgcaaaccctaattgcctaaccctaatcctaaa 42313947  T

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Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 254 - 352
Target Start/End: Original strand, 26449092 - 26449190
Alignment:
Q  254 tatcctttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaaatttttggctccaattcgttctggccgttagattaatct 352  Q
    ||||||||||||||||||||||||||||  | || |||||||||||||||||||| |||| ||||||||||||| |  ||||| ||||||||| |||||    
T  26449092 tatcctttatatctaatcctagcaaacatgcttaccctaattgccaaaccctaattctaattttttggctccaaattattctgaccgttagataaatct 26449190  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 253 - 352
Target Start/End: Complemental strand, 22145718 - 22145619
Alignment:
Q  253 ttatcctttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaaatttttggctccaattcgttctggccgttagattaatct 352  Q
    |||||||||||||||||||||||||   |  | || ||||||| || |||||||||||||| ||||||||||||| | ||||  ||||||||||||||||    
T  22145718 ttatcctttatatctaatcctagcagtaatgcttaccctaatttcctaaccctaatcctaagtttttggctccaaattgttccagccgttagattaatct 22145619  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 254 - 342
Target Start/End: Original strand, 38403354 - 38403442
Alignment:
Q  254 tatcctttatatctaatcctagcaaacactcctaacc-taattgccaaaccctaatcctaaatttttggctccaattcgttctggccgtt 342  Q
    ||||||||||||||||||||||||  || | | |||| || |||||||||||||||||||| ||||||||||||| ||||||||| ||||    
T  38403354 tatcctttatatctaatcctagcag-caatgcaaaccctatttgccaaaccctaatcctaattttttggctccaaatcgttctggtcgtt 38403442  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 314
Target Start/End: Original strand, 4768477 - 4768537
Alignment:
Q  254 tatcctttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaaa 314  Q
    |||||||||||||||||| |||||||||  | || |||||||| |||||||||| ||||||    
T  4768477 tatcctttatatctaatcttagcaaacatgcttatcctaattgtcaaaccctaaacctaaa 4768537  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 327
Target Start/End: Complemental strand, 31409776 - 31409704
Alignment:
Q  255 atcctttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaaatttttggctccaa 327  Q
    ||||||||||| |||||||||||||||  | || ||||||| ||||||||| | ||||  |||||||||||||    
T  31409776 atcctttatatataatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaa 31409704  T

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Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 259 - 352
Target Start/End: Complemental strand, 23073505 - 23073412
Alignment:
Q  259 tttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaaatttttggctccaattcgttctggccgttagattaatct 352  Q
    ||||||||||||||| |||||||  | || |||||||| |||||||||||||||| |||||| |||||| ||||||||||||||| || |||||    
T  23073505 tttatatctaatccttgcaaacatgcttaccctaattgtcaaaccctaatcctaattttttgtctccaaatcgttctggccgttaaataaatct 23073412  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 258 - 327
Target Start/End: Original strand, 8840653 - 8840722
Alignment:
Q  258 ctttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaaatttttggctccaa 327  Q
    ||||||||||||||||||||||||  | || ||||||||||||||| ||| ||||  |||| ||||||||    
T  8840653 ctttatatctaatcctagcaaacatgcttaccctaattgccaaaccttaaacctattttttcggctccaa 8840722  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 255 - 352
Target Start/End: Original strand, 18645950 - 18646047
Alignment:
Q  255 atcctttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaaatttttggctccaattcgttctggccgttagattaatct 352  Q
    |||||||||||||||||||||||   |    || ||||||| |  |||||||||||||| ||||||||||||| | ||||  ||||||||||||||||    
T  18645950 atcctttatatctaatcctagcagtaatgtttaccctaatttcttaaccctaatcctaagtttttggctccaaattgttccagccgttagattaatct 18646047  T

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Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 255 - 352
Target Start/End: Original strand, 52126885 - 52126982
Alignment:
Q  255 atcctttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaaatttttggctccaattcgttctggccgttagattaatct 352  Q
    |||||||||||||||||||||||||||  | || ||||||| |  |||||||||||||| ||||||||||||| ||||||  |||||| |||||||||    
T  52126885 atcctttatatctaatcctagcaaacatgcttaccctaatttcttaaccctaatcctaagtttttggctccaaatcgttccagccgttggattaatct 52126982  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 255 - 328
Target Start/End: Original strand, 29129130 - 29129203
Alignment:
Q  255 atcctttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaaatttttggctccaat 328  Q
    |||||||||||||||||||||||||||    || ||||||||||||||||||| ||||  ||||||||||||||    
T  29129130 atcctttatatctaatcctagcaaacatgtttaccctaattgccaaaccctaaacctacttttttggctccaat 29129203  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 253 - 352
Target Start/End: Original strand, 43399448 - 43399547
Alignment:
Q  253 ttatcctttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaaatttttggctccaattcgttctggccgttagattaatct 352  Q
    |||||||||||||||||||||||||   |  | || ||||||| || |||| ||||||||| ||||||||||||| | ||||  ||||||||||||||||    
T  43399448 ttatcctttatatctaatcctagcagtaatgcttaccctaatttcctaaccttaatcctaagtttttggctccaaattgttccagccgttagattaatct 43399547  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 260 - 328
Target Start/End: Original strand, 53689246 - 53689314
Alignment:
Q  260 ttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaaatttttggctccaat 328  Q
    |||||| |||||||||||||||  | || ||||||||||||||||||| ||||  ||||||||||||||    
T  53689246 ttatatttaatcctagcaaacatgcttaccctaattgccaaaccctaaacctacttttttggctccaat 53689314  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 253 - 352
Target Start/End: Complemental strand, 19009726 - 19009628
Alignment:
Q  253 ttatcctttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaaatttttggctccaattcgttctggccgttagattaatct 352  Q
    |||||||||||||||||||||||||||||  |  | |||||||||||| | |||| ||| | |||||||||||| ||  | ||| ||||||||| |||||    
T  19009726 ttatcctttatatctaatcctagcaaacaagcaaaccctaattgccaacctctaaacct-actttttggctccattttatcctgaccgttagatcaatct 19009628  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 255 - 328
Target Start/End: Original strand, 29836239 - 29836312
Alignment:
Q  255 atcctttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaaatttttggctccaat 328  Q
    |||||||||||||||||||||||||||    || ||||||||||||||||||| ||||  ||||||||||||||    
T  29836239 atcctttatatctaatcctagcaaacatgtttaccctaattgccaaaccctaaacctacttttttggctccaat 29836312  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 255 - 328
Target Start/End: Complemental strand, 40981666 - 40981593
Alignment:
Q  255 atcctttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaaatttttggctccaat 328  Q
    |||||||||||||||||||||||||||  | || ||||||| ||||||||||| ||||  ||||||||||||||    
T  40981666 atcctttatatctaatcctagcaaacatgcttaccctaatttccaaaccctaaacctacttttttggctccaat 40981593  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 254 - 329
Target Start/End: Original strand, 50290432 - 50290507
Alignment:
Q  254 tatcctttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaaatttttggctccaatt 329  Q
    ||||||||||||||||||||| ||||||  | |||||||| | ||||||||||| ||||  |||||||||||||||    
T  50290432 tatcctttatatctaatcctaacaaacatgcttaacctaaattccaaaccctaaacctatttttttggctccaatt 50290507  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 281
Target Start/End: Complemental strand, 39076296 - 39076268
Alignment:
Q  253 ttatcctttatatctaatcctagcaaaca 281  Q
    |||||||||||||||||||||||||||||    
T  39076296 ttatcctttatatctaatcctagcaaaca 39076268  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 255 - 327
Target Start/End: Complemental strand, 14210491 - 14210419
Alignment:
Q  255 atcctttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaaatttttggctccaa 327  Q
    |||||||||||||||||||||||||||  | || ||||||| ||||||||| | ||||  |||||||||||||    
T  14210491 atcctttatatctaatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaa 14210419  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 255 - 327
Target Start/End: Complemental strand, 14211460 - 14211388
Alignment:
Q  255 atcctttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaaatttttggctccaa 327  Q
    |||||||||||||||||||||||||||  | || ||||||| ||||||||| | ||||  |||||||||||||    
T  14211460 atcctttatatctaatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaa 14211388  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 255 - 327
Target Start/End: Complemental strand, 14212411 - 14212339
Alignment:
Q  255 atcctttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaaatttttggctccaa 327  Q
    |||||||||||||||||||||||||||  | || ||||||| ||||||||| | ||||  |||||||||||||    
T  14212411 atcctttatatctaatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaa 14212339  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 255 - 327
Target Start/End: Complemental strand, 14213380 - 14213308
Alignment:
Q  255 atcctttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaaatttttggctccaa 327  Q
    |||||||||||||||||||||||||||  | || ||||||| ||||||||| | ||||  |||||||||||||    
T  14213380 atcctttatatctaatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaa 14213308  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 255 - 327
Target Start/End: Complemental strand, 14214348 - 14214276
Alignment:
Q  255 atcctttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaaatttttggctccaa 327  Q
    |||||||||||||||||||||||||||  | || ||||||| ||||||||| | ||||  |||||||||||||    
T  14214348 atcctttatatctaatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaa 14214276  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 255 - 327
Target Start/End: Complemental strand, 14215317 - 14215245
Alignment:
Q  255 atcctttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaaatttttggctccaa 327  Q
    |||||||||||||||||||||||||||  | || ||||||| ||||||||| | ||||  |||||||||||||    
T  14215317 atcctttatatctaatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaa 14215245  T

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Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 255 - 327
Target Start/End: Complemental strand, 14218188 - 14218116
Alignment:
Q  255 atcctttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaaatttttggctccaa 327  Q
    |||||||||||||||||||||||||||  | || ||||||| ||||||||| | ||||  |||||||||||||    
T  14218188 atcctttatatctaatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaa 14218116  T

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Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 255 - 327
Target Start/End: Complemental strand, 14219158 - 14219086
Alignment:
Q  255 atcctttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaaatttttggctccaa 327  Q
    |||||||||||||||||||||||||||  | || ||||||| ||||||||| | ||||  |||||||||||||    
T  14219158 atcctttatatctaatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaa 14219086  T

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Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 255 - 327
Target Start/End: Complemental strand, 14220127 - 14220055
Alignment:
Q  255 atcctttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaaatttttggctccaa 327  Q
    |||||||||||||||||||||||||||  | || ||||||| ||||||||| | ||||  |||||||||||||    
T  14220127 atcctttatatctaatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaa 14220055  T

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Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 255 - 327
Target Start/End: Complemental strand, 14221078 - 14221006
Alignment:
Q  255 atcctttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaaatttttggctccaa 327  Q
    |||||||||||||||||||||||||||  | || ||||||| ||||||||| | ||||  |||||||||||||    
T  14221078 atcctttatatctaatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaa 14221006  T

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Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 255 - 327
Target Start/End: Complemental strand, 14222047 - 14221975
Alignment:
Q  255 atcctttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaaatttttggctccaa 327  Q
    |||||||||||||||||||||||||||  | || ||||||| ||||||||| | ||||  |||||||||||||    
T  14222047 atcctttatatctaatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaa 14221975  T

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Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 255 - 327
Target Start/End: Complemental strand, 14223016 - 14222944
Alignment:
Q  255 atcctttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaaatttttggctccaa 327  Q
    |||||||||||||||||||||||||||  | || ||||||| ||||||||| | ||||  |||||||||||||    
T  14223016 atcctttatatctaatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaa 14222944  T

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Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 327
Target Start/End: Complemental strand, 14209540 - 14209468
Alignment:
Q  255 atcctttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaaatttttggctccaa 327  Q
    ||||||||||||||||| |||||||||  | || ||||||| ||||||||| | ||||  |||||||||||||    
T  14209540 atcctttatatctaatcgtagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaa 14209468  T

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Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 327
Target Start/End: Complemental strand, 14216286 - 14216214
Alignment:
Q  255 atcctttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaaatttttggctccaa 327  Q
    ||||||||||| |||||||||||||||  | || ||||||| ||||||||| | ||||  |||||||||||||    
T  14216286 atcctttatatataatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaa 14216214  T

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Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 327
Target Start/End: Complemental strand, 14217237 - 14217165
Alignment:
Q  255 atcctttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaaatttttggctccaa 327  Q
    ||||||||||||||||| |||||||||  | || ||||||| ||||||||| | ||||  |||||||||||||    
T  14217237 atcctttatatctaatcgtagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaa 14217165  T

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Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 352
Target Start/End: Original strand, 30176040 - 30176137
Alignment:
Q  255 atcctttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaaatttttggctccaattcgttctggccgttagattaatct 352  Q
    ||||||||||| |||||||||||   |  | || |||||||  | |||||||||||||| ||||||||||||| | |||   ||||||||||||||||    
T  30176040 atcctttatatttaatcctagcagtaatgcttaccctaattttctaaccctaatcctaagtttttggctccaaattgtttcagccgttagattaatct 30176137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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