View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10865_low_1 (Length: 648)
Name: NF10865_low_1
Description: NF10865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 572; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 572; E-Value: 0
Query Start/End: Original strand, 18 - 641
Target Start/End: Complemental strand, 52851235 - 52850613
Alignment:
| Q |
18 |
atataggtaggaagcatttactttaatttaatcactatcatcttacannnnnnnncaatgatagaacgaaacctagaagataaaagtagaagtaaactgc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52851235 |
atataggtaggaagcatttactttaatttaatcactatcatcttacatttcttttcaatgatagaacgaaacctagaagataaaagtagaagtaaactgc |
52851136 |
T |
|
| Q |
118 |
aacactaatttaaccgacctgagtttgaattgctgaaatgtcccctttttcccccctcaagctagctctattaaagggtagacattgtgtccttccaact |
217 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52851135 |
aacactaatttaaccgacctgaatttaaattgctgaaatgtcccctttttccccc-tcaagctagctctattaaagggtagacattgtgtccttccaact |
52851037 |
T |
|
| Q |
218 |
aagggattttatgctcttacgtcggcttaagaagccaaatccaaaagttttctttgaggtctcggccgtgttaataaaaccaaccaactttgcaacaagc |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
52851036 |
aagggattttatgctcttacgtcggcttaagaagccaaatccaaaagttttctttgaggtctcacccgtgttaataaaaccaaccaactttgcaacaagc |
52850937 |
T |
|
| Q |
318 |
gcagcactttctcttatgtggttcaaatctcttgtatccgtccatatgagccatgccaattgtatacttctgtgttttgtcttcaaatcaataccccact |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52850936 |
gcagcactttctcttatgtggttcaaatctcttgtatccgtccatatgagccatgccaattgtatacttctgtgttttgtcttcaaatcaataccccact |
52850837 |
T |
|
| Q |
418 |
tcaggtatagttcctctcttcccttcctcgaaaacttcttatgcacttgcttactgagcattttcctctcacgggttagagacagcaggctgttcagtaa |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52850836 |
tcaggtatagttcctctcttcccttcctcgaaaacttcttatgcacttgcttactgagcattttcctctcacgggttagagacagcaggctgttcagtaa |
52850737 |
T |
|
| Q |
518 |
ttgtggcatgaaaatagtgtgaaaacttgatatatgacataaaaatagcatataattgtgactttatgcaagtgtttgatgtaaagtattcaaagtgaaa |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
52850736 |
ttgtggcatgaaaatagtgtgaaaacttgatatatgacataaaaatagcatataattgtgactttatgcaagtgtttgatgtaaagcattcaaagtgaaa |
52850637 |
T |
|
| Q |
618 |
caccagccattatgtttcatctca |
641 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
52850636 |
caccagccattatgtttcatctca |
52850613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University