View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10865_low_12 (Length: 296)
Name: NF10865_low_12
Description: NF10865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865_low_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 21 - 283
Target Start/End: Original strand, 34947095 - 34947357
Alignment:
| Q |
21 |
ccaaatcattcattttctcctccttcccaacacccttcgtgttttcctctaccttcttcttgatgttcctctaccctcgannnnnnnnnnnnnnnnnnnn |
120 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
34947095 |
ccaaatccttcattttatcctccttcccaacacccttcgtgttttcctctaccttcttcttggtgttcctctaccctcgattttttccacatttttcttt |
34947194 |
T |
|
| Q |
121 |
nngtcctccccaaccaagtccatcattttcccttccaacacatatctttcacttcttcctctgtcttttcttagacgttccttatgcccttgattttttc |
220 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| | |
|
|
| T |
34947195 |
ttgtcctccccaaccaagtccttcattttcccttccaacacatatctttcacttcttcctctctcttttcttagacgttcctcatgcccttgatttttgc |
34947294 |
T |
|
| Q |
221 |
cgcatctgccttttcgttctccccaaccaggtccttcatttcctcctcctcccacctctcctt |
283 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
34947295 |
tgcatctgccttttcgttctccctaaccagatccttcatttcctcctcctcccacctctcctt |
34947357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 123 - 286
Target Start/End: Original strand, 34948608 - 34948772
Alignment:
| Q |
123 |
gtcctccccaaccaagtccatcattttcccttccaac-acatatctttcacttcttcctctgtcttttcttagacgttccttatgcccttgattttttcc |
221 |
Q |
| |
|
|||||||||||| | |||| |||||||||| ||| | | ||||| ||||| |||| |||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
34948608 |
gtcctccccaactacgtccttcattttcccctccttccaaatatccttcacgtctttctctgtcttttctttgacgttccttagacccttgattttttcc |
34948707 |
T |
|
| Q |
222 |
gcatctgccttttcgttctccccaaccaggtccttcatttcctcctcctcccacctctccttcat |
286 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||| |
|
|
| T |
34948708 |
gcatctgccttttcgttctccccaaccaggtccttgattttctcctcctcccacgcctccttcat |
34948772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University