View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10865_low_22 (Length: 228)
Name: NF10865_low_22
Description: NF10865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 10 - 211
Target Start/End: Complemental strand, 11879037 - 11878836
Alignment:
| Q |
10 |
agagatgaaaagagaggtcttgaagctgttgagaagctgaaacagctttctctgcctggtcttgttgtttttcatcaacttgatgtcatagatcatgcaa |
109 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11879037 |
agagatgaaaagagaggtcttgaagctgttgagaaattgaaacagctttctttgcctggtcttgttgtttttcatcaacttgatgtcatagatcatgcaa |
11878938 |
T |
|
| Q |
110 |
gtataagatcatttgtagattttatcaagaatcaatttggtaatctagatcttttggtaagagaattcaaatttatatcaaagtttgtataagtagatag |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11878937 |
gtataagatcatttgtagattttatcaagaatcaatttggtaatctagatcttttggtaagagaattcaaatttatatcaaagtttgtataagtagatag |
11878838 |
T |
|
| Q |
210 |
ag |
211 |
Q |
| |
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|| |
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|
| T |
11878837 |
ag |
11878836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 10 - 211
Target Start/End: Complemental strand, 11894044 - 11893843
Alignment:
| Q |
10 |
agagatgaaaagagaggtcttgaagctgttgagaagctgaaacagctttctctgcctggtcttgttgtttttcatcaacttgatgtcatagatcatgcaa |
109 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11894044 |
agagatgaaaagagaggtcttgaagctgttgagaaattgaaacagctttctttgcctggtcttgttgtttttcatcaacttgatgtcatagatcatgcaa |
11893945 |
T |
|
| Q |
110 |
gtataagatcatttgtagattttatcaagaatcaatttggtaatctagatcttttggtaagagaattcaaatttatatcaaagtttgtataagtagatag |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11893944 |
gtataagatcatttgtagattttatcaagaatcaatttggtaatctagatcttttggtaagagaattcaaatttatatcaaagtttgtataagtagatag |
11893845 |
T |
|
| Q |
210 |
ag |
211 |
Q |
| |
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|| |
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| T |
11893844 |
ag |
11893843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 10 - 211
Target Start/End: Complemental strand, 11896453 - 11896252
Alignment:
| Q |
10 |
agagatgaaaagagaggtcttgaagctgttgagaagctgaaacagctttctctgcctggtcttgttgtttttcatcaacttgatgtcatagatcatgcaa |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11896453 |
agagatgaaaagagaggtcttgaagctgttgagaaattgaaacagctttctttgcctggtcttgttgtttttcatcaacttgatgtcatagatcatgcaa |
11896354 |
T |
|
| Q |
110 |
gtataagatcatttgtagattttatcaagaatcaatttggtaatctagatcttttggtaagagaattcaaatttatatcaaagtttgtataagtagatag |
209 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11896353 |
gtataagatcatttgtagattttatcaagaatcaatttggtaatctagatcttttggtaagagaattcaaatttatatcaaagtttgtataagtagatag |
11896254 |
T |
|
| Q |
210 |
ag |
211 |
Q |
| |
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|| |
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|
| T |
11896253 |
ag |
11896252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 10 - 185
Target Start/End: Complemental strand, 11875428 - 11875253
Alignment:
| Q |
10 |
agagatgaaaagagaggtcttgaagctgttgagaagctgaaacagctttctctgcctggtcttgttgtttttcatcaacttgatgtcatagatcatgcaa |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
11875428 |
agagatgaaaagagaggtcttgaagctgttgagaaattgaaacagctttctttgcctggtcttgttgttttccaacaacttgatgtcatagatcatgcaa |
11875329 |
T |
|
| Q |
110 |
gtataagatcatttgtagattttatcaagaatcaatttggtaatctagatcttttggtaagagaattcaaatttat |
185 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||| | ||||||||||| |
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| T |
11875328 |
gtataagatcatttgtagattttatcaagaatcaatttggtaaactagatatcttggtaagaaagttcaaatttat |
11875253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 10 - 170
Target Start/End: Complemental strand, 11868964 - 11868804
Alignment:
| Q |
10 |
agagatgaaaagagaggtcttgaagctgttgagaagctgaaacagctttctctgcctggtcttgttgtttttcatcaacttgatgtcatagatcatgcaa |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| | |
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| T |
11868964 |
agagatgaaaagagaggtcttgaagctgttgagaagctgaaacatctttctctgcctggtcttgttgtttttcatcaacttgatgtcatagatgctgcga |
11868865 |
T |
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| Q |
110 |
gtataagatcatttgtagattttatcaagaatcaatttggtaatctagatcttttggtaag |
170 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| || |||||| | |||||||| |
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| T |
11868864 |
gtataagatcatttgtagattttatcaagaatcaatttggaaaactagatatcttggtaag |
11868804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 10 - 177
Target Start/End: Original strand, 25859028 - 25859195
Alignment:
| Q |
10 |
agagatgaaaagagaggtcttgaagctgttgagaagctgaaacagctttctctgcctggtcttgttgtttttcatcaacttgatgtcatagatcatgcaa |
109 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| || |||| | ||| | || ||||| | ||| ||||| |||||||||||||||||||||| | ||| |
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| T |
25859028 |
agagatgagaagagaggtcttgaagctgttgataaattgaaggatcttgcacttcctggccatgtggttttccatcaacttgatgtcatagatcctacaa |
25859127 |
T |
|
| Q |
110 |
gtataagatcatttgtagattttatcaagaatcaatttggtaatctagatcttttggtaagagaattc |
177 |
Q |
| |
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|||| |||| |||| |||||| |||| |||||||||||||| || ||| | |||||| || ||||| |
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| T |
25859128 |
gtattggatcttttgcagatttcctcaaaaatcaatttggtaaacttgatatcttggtatgataattc |
25859195 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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