View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10865_low_23 (Length: 226)
Name: NF10865_low_23
Description: NF10865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865_low_23 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-125; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 38422658 - 38422433
Alignment:
| Q |
1 |
tttggatgaattattcccttgccctagccaacataattcaaagtaatttacattattagataagtggcctaatggccacacggtggaagcacgatataaa |
100 |
Q |
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| T |
38422658 |
tttggatgaattattcccttgccctagccaacataattcaaagtaatttacattattagataagtggcctaatggccacacggtggaagcacgatataaa |
38422559 |
T |
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| Q |
101 |
acgtcttcacaacaaggacaattcttgatatatataacaaacttgaaaatgatactttaccttgaaagagttttaacatttgtcatgtgaagcaacaaaa |
200 |
Q |
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| T |
38422558 |
acgtcttcacaacaaggacaattcttgatatatataacaaacttgaaaatgatactttaccttgaaagagttttaacatttgtcatgtgaagcaacaaaa |
38422459 |
T |
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| Q |
201 |
tatccattatgtcaaataaaacacat |
226 |
Q |
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| T |
38422458 |
tatccattatgtcaaataaaacacat |
38422433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 109 - 226
Target Start/End: Complemental strand, 38412593 - 38412479
Alignment:
| Q |
109 |
acaacaaggacaattcttgatatatataacaaacttgaaaatgatactttaccttgaaagagttttaacatttgtcatgtgaagcaacaaaatatccatt |
208 |
Q |
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| T |
38412593 |
acaacgaggacaattcttgatatatg--acaaacttgaaaatgatattttccattgaaagagttt-aacatttgttatgtgaagcaacaaaatatccatt |
38412497 |
T |
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| Q |
209 |
atgtcaaataaaacacat |
226 |
Q |
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| T |
38412496 |
atgtgatataaaacacat |
38412479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 109
Target Start/End: Complemental strand, 38412700 - 38412614
Alignment:
| Q |
28 |
ccaacataattcaaagtaa-tttacattattagataagtg----gcctaatggccacacggtggaagcacgatataaaacgtcttca |
109 |
Q |
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| T |
38412700 |
ccaacataattcaaagtaattttattttattagataagtgccctacctaatggccatatggtggaaacacgatataaaatgtcttca |
38412614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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