View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10865_low_24 (Length: 225)

Name: NF10865_low_24
Description: NF10865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10865_low_24
NF10865_low_24
[»] chr6 (3 HSPs)
chr6 (11-212)||(18246406-18246607)
chr6 (28-212)||(2920813-2920997)
chr6 (128-212)||(32548935-32549018)
[»] chr3 (2 HSPs)
chr3 (11-212)||(1259153-1259354)
chr3 (11-212)||(37242441-37242642)
[»] chr4 (1 HSPs)
chr4 (19-212)||(16989630-16989823)
[»] chr7 (1 HSPs)
chr7 (11-212)||(31234604-31234806)
[»] chr2 (1 HSPs)
chr2 (136-212)||(33858639-33858715)
[»] chr8 (3 HSPs)
chr8 (136-212)||(37269828-37269904)
chr8 (136-212)||(42941264-42941340)
chr8 (151-212)||(36404064-36404125)
[»] scaffold0760 (1 HSPs)
scaffold0760 (136-212)||(1707-1783)
[»] chr5 (1 HSPs)
chr5 (177-212)||(36989053-36989088)


Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 11 - 212
Target Start/End: Original strand, 18246406 - 18246607
Alignment:
Q  11 aagcagagatatacatggaagggcggaaacaagccaaactccaaaaaagtaaatttacaaaatccctcccatagaaccgcaccaacaataacgcttcagc 110  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  18246406 aagcacagatatacatggaagggcggaaacaagccaaactccaaaaaagtaaatttacaaaatccctcccatagaaccgcaccaacaataacgctccagc 18246505  T
Q  111 tacaacagcacaaaaaggcagattcaaaaagacagccgcgttcatcttctgtttagacattttcgtggattccacgtccactcatagaagaggaaagaag 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  18246506 tacaacagcacaaaaaggcagattcaaaaagacagccgcgttcatcttctgtttagacattctcgtggattccacgtccactcatagaagaggaaagaag 18246605  T
Q  211 ct 212  Q
    ||    
T  18246606 ct 18246607  T

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Target: chr6; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 28 - 212
Target Start/End: Original strand, 2920813 - 2920997
Alignment:
Q  28 gaagggcggaaacaagccaaactccaaaaaagtaaatttacaaaatccctcccatagaaccgcaccaacaataacgcttcagctacaacagcacaaaaag 127  Q
    |||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||| |||| ||||    
T  2920813 gaagggtggaaacaaaccaaattccaaaaaagtaaatttacaaaatccctcccatagatctgcaccaacaataacgctccagctacaacaacacagaaag 2920912  T
Q  128 gcagattcaaaaagacagccgcgttcatcttctgtttagacattttcgtggattccacgtccactcatagaagaggaaagaagct 212  Q
    ||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||    
T  2920913 gcagattcaaaaagaaagccacgttcatcttctgtttagacattctcgtggattccatgtccactcataaaagaggaaagaagct 2920997  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 212
Target Start/End: Complemental strand, 32549018 - 32548935
Alignment:
Q  128 gcagattcaaaaagacagccgcgttcatcttctgtttagacattttcgtggattccacgtccactcatagaagaggaaagaagct 212  Q
    ||||||||||||| |||||  | |||||||||| |||||||||| ||  |||||| | ||||||| ||| |||| ||||||||||    
T  32549018 gcagattcaaaaaaacagcacccttcatcttctatttagacattatctaggattctaagtccacttataaaaga-gaaagaagct 32548935  T

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Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 11 - 212
Target Start/End: Original strand, 1259153 - 1259354
Alignment:
Q  11 aagcagagatatacatggaagggcggaaacaagccaaactccaaaaaagtaaatttacaaaatccctcccatagaaccgcaccaacaataacgcttcagc 110  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1259153 aagcacagatatacatggaagggcggaaacaagccaaactccaaaaaagtaaatttacaaaatccctcccatagaaccgcaccaacaataacgctccagc 1259252  T
Q  111 tacaacagcacaaaaaggcagattcaaaaagacagccgcgttcatcttctgtttagacattttcgtggattccacgtccactcatagaagaggaaagaag 210  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  1259253 tacaacagcacaaaaaggcagattcaaaaagacagccgtgttcatcttctgtttagacattctcgtggattccacgtccactcatagaagaggaaagaag 1259352  T
Q  211 ct 212  Q
    ||    
T  1259353 ct 1259354  T

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Target: chr3; HSP #2
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 11 - 212
Target Start/End: Original strand, 37242441 - 37242642
Alignment:
Q  11 aagcagagatatacatggaagggcggaaacaagccaaactccaaaaaagtaaatttacaaaatccctcccatagaaccgcaccaacaataacgcttcagc 110  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  37242441 aagcacagatatacatggaagggcggaaacaagccaaactccataaaagtaaatttacaaaatccctcccatagaaccgcaccaacaataacgctccagc 37242540  T
Q  111 tacaacagcacaaaaaggcagattcaaaaagacagccgcgttcatcttctgtttagacattttcgtggattccacgtccactcatagaagaggaaagaag 210  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  37242541 tacaacagcacaaaaaggcagattcaaaaagacagccgtgttcatcttctgtttagacattctcgtggattccacgtccactcatagaagaggaaagaag 37242640  T
Q  211 ct 212  Q
    ||    
T  37242641 ct 37242642  T

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Target: chr4 (Bit Score: 182; Significance: 1e-98; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 19 - 212
Target Start/End: Complemental strand, 16989823 - 16989630
Alignment:
Q  19 atatacatggaagggcggaaacaagccaaactccaaaaaagtaaatttacaaaatccctcccatagaaccgcaccaacaataacgcttcagctacaacag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  16989823 atatacatggaagggcggaaacaagccaaactccaaaaaagtaaatttacaaaatccctcccatagaaccgcaccaacaataacgctccagctacaacag 16989724  T
Q  119 cacaaaaaggcagattcaaaaagacagccgcgttcatcttctgtttagacattttcgtggattccacgtccactcatagaagaggaaagaagct 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  16989723 cacaaaaaggcagattcaaaaagacagccgcgttcatcttctgtttagacattctcatggattccacgtccactcatagaagaggaaagaagct 16989630  T

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Target: chr7 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 11 - 212
Target Start/End: Original strand, 31234604 - 31234806
Alignment:
Q  11 aagcagagatatacatggaagggcggaaacaagccaaactccaaaa-aagtaaatttacaaaatccctcccatagaaccgcaccaacaataacgcttcag 109  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  ||    
T  31234604 aagcacagatatacatggaagggcggaaacaatccaaactccaaaaaaagtaaatttacaaaatccctcccatagaaccgcaccaacaataacgctctag 31234703  T
Q  110 ctacaacagcacaaaaaggcagattcaaaaagacagccgcgttcatcttctgtttagacattttcgtggattccacgtccactcatagaagaggaaagaa 209  Q
    |||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  31234704 ctacaacatcacaaaaaggcagattcaaaaagacagtcgtgttcatcttctgtttagacattctcgtggattccaagtccactcatagaagaggaaagaa 31234803  T
Q  210 gct 212  Q
    |||    
T  31234804 gct 31234806  T

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Target: chr2 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 136 - 212
Target Start/End: Original strand, 33858639 - 33858715
Alignment:
Q  136 aaaaagacagccgcgttcatcttctgtttagacattttcgtggattccacgtccactcatagaagaggaaagaagct 212  Q
    ||||| |||||| |||||||||||| |||||||||| ||| |||||||| ||||||||||| |||||||| ||||||    
T  33858639 aaaaaaacagccacgttcatcttctatttagacattctcgaggattccaagtccactcatataagaggaaggaagct 33858715  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 136 - 212
Target Start/End: Original strand, 37269828 - 37269904
Alignment:
Q  136 aaaaagacagccgcgttcatcttctgtttagacattttcgtggattccacgtccactcatagaagaggaaagaagct 212  Q
    |||||||||||||  |||||||||| || ||||||| ||  |||||||| ||||||||||| |||||||| ||||||    
T  37269828 aaaaagacagccggcttcatcttctattaagacattctctaggattccaagtccactcataaaagaggaaggaagct 37269904  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 212
Target Start/End: Complemental strand, 42941340 - 42941264
Alignment:
Q  136 aaaaagacagccgcgttcatcttctgtttagacattttcgtggattccacgtccactcatagaagaggaaagaagct 212  Q
    |||||||||||||  |||||||||| ||  |||||| ||  |||||||| ||||||||||| |||||||| ||||||    
T  42941340 aaaaagacagccggcttcatcttctattacgacattctctaggattccaagtccactcataaaagaggaaggaagct 42941264  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 212
Target Start/End: Original strand, 36404064 - 36404125
Alignment:
Q  151 ttcatcttctgtttagacattttcgtggattccacgtccactcatagaagaggaaagaagct 212  Q
    |||||||||| |||| ||||| ||  |||||||| |||||||| ||||||||||| ||||||    
T  36404064 ttcatcttctatttaaacattctctaggattccaagtccactcgtagaagaggaaggaagct 36404125  T

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Target: scaffold0760 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0760
Description:

Target: scaffold0760; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 212
Target Start/End: Original strand, 1707 - 1783
Alignment:
Q  136 aaaaagacagccgcgttcatcttctgtttagacattttcgtggattccacgtccactcatagaagaggaaagaagct 212  Q
    |||||||||| ||  |||||||||| || ||||||| ||  |||||||| ||||||||||| |||||||| ||||||    
T  1707 aaaaagacagtcggcttcatcttctattaagacattctctaggattccaagtccactcataaaagaggaaggaagct 1783  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 212
Target Start/End: Complemental strand, 36989088 - 36989053
Alignment:
Q  177 ggattccacgtccactcatagaagaggaaagaagct 212  Q
    |||||||||||||||| |||||||||||||||||||    
T  36989088 ggattccacgtccacttatagaagaggaaagaagct 36989053  T

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