View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10865_low_25 (Length: 209)
Name: NF10865_low_25
Description: NF10865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865_low_25 |
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| [»] scaffold0150 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 120; Significance: 1e-61; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 26 - 189
Target Start/End: Complemental strand, 52142208 - 52142045
Alignment:
| Q |
26 |
ttgccaatcggtactgttgtgaagctgctaagcgcgaattgcatggttggtagcttaggaaatctatatgagagtgttgaaaacctcaaccagaattaca |
125 |
Q |
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| T |
52142208 |
ttgccaatcggcactgttgtgaagctgctaagcgctaatggcatggttggtagcttagggaatctgtatgagagtgttgaaaacctcaaccagaattaca |
52142109 |
T |
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| Q |
126 |
tgctacacgaccaaactaaggatgttctgttaaacccaagagctcaaagctcgtcgactgaaat |
189 |
Q |
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| T |
52142108 |
tgctaccagatcaaactaaggatgtactcttaaacccaagagctcaaagctcgtcaactgaaat |
52142045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 23 - 192
Target Start/End: Complemental strand, 52145729 - 52145560
Alignment:
| Q |
23 |
tgcttgccaatcggtactgttgtgaagctgctaagcgcgaattgcatggttggtagcttaggaaatctatatgagagtgttgaaaacctcaaccagaatt |
122 |
Q |
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| T |
52145729 |
tgcttgccaattggcaccgtggttaagctcctaagcacaaatggcatgattggtagtttaggaaatctgtatcagagtgttgaaaacctcaaccaaaatt |
52145630 |
T |
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| Q |
123 |
acatgctacacgaccaaactaaggatgttctgttaaacccaagagctcaaagctcgtcgactgaaatctc |
192 |
Q |
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| T |
52145629 |
gcatgcaaccatttcaaacgaaggatgtcttgctaaacccaagagctcaaagcttttcaactgaaatctc |
52145560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 112; Significance: 8e-57; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 23 - 190
Target Start/End: Original strand, 17522376 - 17522543
Alignment:
| Q |
23 |
tgcttgccaatcggtactgttgtgaagctgctaagcgcgaattgcatggttggtagcttaggaaatctatatgagagtgttgaaaacctcaaccagaatt |
122 |
Q |
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| T |
17522376 |
tgcttgccaatcggcactgttgtgaagctactaagcgcaaatggcatggttggtagcttagggaatctgtatgagagtgttgaaaacctcaatcagaatt |
17522475 |
T |
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| Q |
123 |
acatgctacacgaccaaactaaggatgttctgttaaacccaagagctcaaagctcgtcgactgaaatc |
190 |
Q |
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| T |
17522476 |
gcatgctaccagaacaaacgaaggatgttctcttaaacccaagagctcaaagctcgtcaactgaaatc |
17522543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 128
Target Start/End: Complemental strand, 17016962 - 17016902
Alignment:
| Q |
68 |
atggttggtagcttaggaaatctatatgagagtgttgaaaacctcaaccagaattacatgc |
128 |
Q |
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| T |
17016962 |
atggttgggagcttaggcaacctctaccagagtgtagaaaacctcaaccacaattacatgc |
17016902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 128
Target Start/End: Complemental strand, 17547399 - 17547339
Alignment:
| Q |
68 |
atggttggtagcttaggaaatctatatgagagtgttgaaaacctcaaccagaattacatgc |
128 |
Q |
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| T |
17547399 |
atggttgggagcttaggcaacctctaccagagtgtagaaaacctcaaccacaattacatgc |
17547339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0150 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0150
Description:
Target: scaffold0150; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 128
Target Start/End: Original strand, 18111 - 18171
Alignment:
| Q |
68 |
atggttggtagcttaggaaatctatatgagagtgttgaaaacctcaaccagaattacatgc |
128 |
Q |
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| T |
18111 |
atggttgggagcttaggcaacctctaccagagtgtagaaaacctcaaccacaattacatgc |
18171 |
T |
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