View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10865_low_3 (Length: 415)
Name: NF10865_low_3
Description: NF10865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 14 - 401
Target Start/End: Original strand, 35648876 - 35649253
Alignment:
| Q |
14 |
agatagatatacacatgagttcttggaagagaatcaacttaacttttgttggtcgtgtcactcttacaaagtttgtttgttttgtttgaattacccatgt |
113 |
Q |
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| T |
35648876 |
agatagatatacacatgagttcttggaagagaatcaacttaacttttgttggtcgtgtcactcttacaaagtttgtttgttttgtttgaattacccatgt |
35648975 |
T |
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| Q |
114 |
atactatatatactatgcaaacatcacatatgaagacatatccctctcttcatatgtgatatgattgatnnnnnnntgtcatggttttatatggagcgat |
213 |
Q |
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| T |
35648976 |
atactatatatactatgcaaacatcacatat----------ccctctcttcatatgtgatatgattgataagaaaatgtcatggttttatatggagcgat |
35649065 |
T |
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| Q |
214 |
gttcctaaccgtagcaaaatgcacattggtaacgtgggagtatttatgtattccaaaagaatatggttgtttgagacttcggtctactaggattgtatgt |
313 |
Q |
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|| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35649066 |
gtacctaaccgtagcaaaatgcacattggtatcgtgggagtatttatgtattccaaaagaatatggttgtttgagacttcggtctactaggattgtatgt |
35649165 |
T |
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| Q |
314 |
cttcattgtgccttgtgtatctatttctaggagaaatttgtctacaagtccaatgcgaaattttgtcttatactttaaggctaaaagt |
401 |
Q |
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| T |
35649166 |
cttcattgtgccttgtgtacctatttctaggagaaattttactacaagtccaatgcgaaattttgtcttatactttaaggctaaaagt |
35649253 |
T |
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