View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10865_low_4 (Length: 402)
Name: NF10865_low_4
Description: NF10865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865_low_4 |
 | |
|
| [»] scaffold0019 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 8 - 286
Target Start/End: Complemental strand, 34789167 - 34788900
Alignment:
| Q |
8 |
gagcagagatgttgcacagaaacatatatcttacattcaagtcatgcactatccactattctatctatcaaactgttgatacagtggtcaacagacctta |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34789167 |
gagcagagatgttgcacagaaacatatatcttacattcaagtcatgcactatccactattctatctatcaaactgttgatacagtggtcaacagacctta |
34789068 |
T |
|
| Q |
108 |
ataacatgcaatttctttagaaaattaattactaatatgtgtggaacgaagctctacagagacggcaactcggatgagcgctaagccacatatcaagcac |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34789067 |
ataacatgcaatttctttagaaaattaattactaatatgtgtggaacgaagctctacagagacggcaactcggatgagcgctaagccacatatcaagcac |
34788968 |
T |
|
| Q |
208 |
tcagaatgataaacattttgacgttctgttaacaccttcaccttttcatcatcttggaaaatactcaaacatatgcagt |
286 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
34788967 |
tcagaatgataaacattttgacgttctgttaacac-----------catcatcttggaaaatactcaaacatatgcagt |
34788900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 137; Significance: 2e-71; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 118 - 352
Target Start/End: Original strand, 2289977 - 2290216
Alignment:
| Q |
118 |
atttctttagaaaattaattactaatatgtgtggaacgaagctctacagagacggcaactcggatga---gcgctaagccacatatcaagcactcagaat |
214 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||| ||||| || ||||||| ||||||| |||||| || ||||||||||||||||||||||||||| |
|
|
| T |
2289977 |
atttctttagaaaatttattactaacatgtgtggagcgaagttcaacagagagggcaactaggatgatgagcactaagccacatatcaagcactcagaat |
2290076 |
T |
|
| Q |
215 |
gataaacattttgacgttctgttaacaccttcaccttttcatcatcttggaaaatactcaaacatatgcagtattc---cttattctcaaaaccagtacc |
311 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
2290077 |
gataaacatgctgacattctgttaacaccttcaccatttcattatctcggaaaatactcaaacatatgcagtattccttcttagtctcaaaaccagtacc |
2290176 |
T |
|
| Q |
312 |
atcaaaaaacataatgtttcaaatcaatcccaatgctccca |
352 |
Q |
| |
|
||| |||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
2290177 |
atc-aaaaccataaagtttcaaatcaatcccaatgctccca |
2290216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 73 - 152
Target Start/End: Original strand, 2289873 - 2289952
Alignment:
| Q |
73 |
tatcaaactgttgatacagtggtcaacagaccttaataacatgc-aatttctttagaaaattaattactaatatgtgtgga |
152 |
Q |
| |
|
|||||||||||||||| | ||||||||| | ||| |||| ||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
2289873 |
tatcaaactgttgataga-tggtcaacaaaacttgataatatgttaatttctttagaaaattaattactaacatgtgtgga |
2289952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 51 - 88
Target Start/End: Original strand, 2289812 - 2289849
Alignment:
| Q |
51 |
atgcactatccactattctatctatcaaactgttgata |
88 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
2289812 |
atgcactatccactattctatccatcaaactgttgata |
2289849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 120 - 279
Target Start/End: Complemental strand, 1495 - 1334
Alignment:
| Q |
120 |
ttctttagaaaattaattactaatatgtgtggaacgaagctctacagagacggc-aactcggatgagcgctaagccacatat-caagcactcagaatgat |
217 |
Q |
| |
|
|||||||||||||| |||||||| | || | || ||||||||| | || ||| |||| |||||||| ||||||||||||| |||| || | |||||| |
|
|
| T |
1495 |
ttctttagaaaattgattactaacaggtatagagggaagctctagaaagtgggcaaactaggatgagcactaagccacatatgcaagtacccgtaatgat |
1396 |
T |
|
| Q |
218 |
aaacattttgacgttctgttaacaccttcaccttttcatcatcttggaaaatactcaaacat |
279 |
Q |
| |
|
||| || ||||| ||||||||||| | |||||||||||||||||| ||||||||||||||| |
|
|
| T |
1395 |
aaatatgttgacattctgttaacaaccacaccttttcatcatcttgaaaaatactcaaacat |
1334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 162 - 293
Target Start/End: Original strand, 7317456 - 7317588
Alignment:
| Q |
162 |
tacagagacggcaactcggatgagcgctaagccacatatc-aagcactcagaatgataaacattttgacgttctgttaacaccttcaccttttcatcatc |
260 |
Q |
| |
|
||||||| ||||||| ||||||| ||||| ||| |||| ||||||| | |||||||||||| |||| ||||||||||| | |||||| ||||||||| |
|
|
| T |
7317456 |
tacagagcgggcaactaggatgagtactaagtcacctatccaagcactgataatgataaacatgttgatattctgttaacaacctcacctattcatcatc |
7317555 |
T |
|
| Q |
261 |
ttggaaaatactcaaacatatgcagtattcctt |
293 |
Q |
| |
|
||| ||| |||||||||||||||| ||||||| |
|
|
| T |
7317556 |
ttgaaaagtactcaaacatatgcaacattcctt |
7317588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 155 - 276
Target Start/End: Complemental strand, 2632844 - 2632722
Alignment:
| Q |
155 |
gaagctctacagagacggcaactcggatgagcgctaagccacatatc-aagcactcagaatgataaacattttgacgttctgttaacaccttcacctttt |
253 |
Q |
| |
|
|||||||||||||| | ||||| | |||||| |||||||||||| | |||||||| || ||||||||| || | ||||||||||| | ||||||||| |
|
|
| T |
2632844 |
gaagctctacagagcagtcaactagaatgagcactaagccacatacccaagcactcgcaaggataaacatgtttccattctgttaacaacctcacctttt |
2632745 |
T |
|
| Q |
254 |
catcatcttggaaaatactcaaa |
276 |
Q |
| |
|
||| ||||||||||||||||||| |
|
|
| T |
2632744 |
cattatcttggaaaatactcaaa |
2632722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 245 - 307
Target Start/End: Complemental strand, 2494856 - 2494791
Alignment:
| Q |
245 |
tcaccttttcatcatcttggaaaatactcaaacatatgcagtattcctt---attctcaaaaccag |
307 |
Q |
| |
|
|||||||| | |||||||| |||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
2494856 |
tcacctttccttcatcttgaaaaatactcaaacatatgcaacattccttctaattctcaaaaccag |
2494791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 199
Target Start/End: Original strand, 9564734 - 9564816
Alignment:
| Q |
117 |
aatttctttagaaaattaattactaatatgtgtggaacgaagctctacagagacggcaactcggatgagcgctaagccacata |
199 |
Q |
| |
|
||||||||||||||||| || ||||| |||| |||| ||||||||| |||| | ||||| |||||| | |||||||||||| |
|
|
| T |
9564734 |
aatttctttagaaaatttatgactaacatgtatggagggaagctctatagagcagtcaactaggatgaacactaagccacata |
9564816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University