View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10865_low_8 (Length: 329)
Name: NF10865_low_8
Description: NF10865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10865_low_8 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 21 - 329
Target Start/End: Original strand, 44734256 - 44734566
Alignment:
| Q |
21 |
actaagttagttaaaacacttgaaaattcaactgacac--aacaaggttaatttggttctctttcttttggtttttgtttgtgttcaaggtactgttgtt |
118 |
Q |
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| T |
44734256 |
actaagttagttaaaacacttgaaaactcaactgacacacaacaaggttaatttggttctctttcttttggtttttgtttgtgttcaaggttctgttgtt |
44734355 |
T |
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| Q |
119 |
gtcgcgggaatgccactgctatttaaagccatcacaaacgacttaaggacccttttcacacnnnnnnnnnnnnggactaatgagtaatgaatgaccccac |
218 |
Q |
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| T |
44734356 |
gtcgcgggaatgccactgctatttaaagtcatcacaaacgacttaaggacccttttcacacaaaaacaaaaaaggactaatgagt----aatgaccccac |
44734451 |
T |
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| Q |
219 |
ctagcatattctttctttctatccttttaacacatttacattgagagggatctattttattcctaaatggtg----tgttttttatttccttcaaatttt |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||| |
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| T |
44734452 |
ctagcatattctttctttctatccttttaacacatttacattgagagggatctattttattcctaaatggtgttttttttttttttttccttcaaatttt |
44734551 |
T |
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| Q |
315 |
gtatgatttgtacct |
329 |
Q |
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||||||||||||||| |
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| T |
44734552 |
gtatgatttgtacct |
44734566 |
T |
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