View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10866_high_1 (Length: 287)
Name: NF10866_high_1
Description: NF10866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10866_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 18 - 280
Target Start/End: Original strand, 3959139 - 3959399
Alignment:
| Q |
18 |
ttaaaaacttgtcagcaagttttcaaattttaccatgagtataataaaagaacacaaccaagtaagtaatgggcaaagtatgaagatctaaatgaattaa |
117 |
Q |
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| T |
3959139 |
ttaaaaacttgtcagcaagttttcaaattttaccatgagtataataaaagaacacaaccaagtaagtaatgggcaaagtatgaagatctaaatgaattaa |
3959238 |
T |
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| Q |
118 |
atttgctgcaaaacaatgttagtattatatttcaacatccattaatttgcatatagaagtaaccttgatgagtaggagatcatatgacaaaagctacttt |
217 |
Q |
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| T |
3959239 |
atttgctgcaaaacagtgttagtattatatttcaacatccattaatttgcatatagaagtaaccttgatgagtaggagatc--atgacaaaagctacttt |
3959336 |
T |
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| Q |
218 |
agagagcttttcgaaacaacggaattaaaagctgctcagattttgcatatcatatctctgctt |
280 |
Q |
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| T |
3959337 |
agagagcttttcgaaacaacggaattaaaagctgctcagattttgcatatcatatctctgctt |
3959399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 94 - 192
Target Start/End: Complemental strand, 33461924 - 33461829
Alignment:
| Q |
94 |
agtatgaagatctaaatgaattaaatttgctgcaaaacaatgttagtattatatttcaacatccattaatttgcatatagaagtaaccttgatgagtag |
192 |
Q |
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| T |
33461924 |
agtatgaaaagctaaatgaattcaaattgctacaaaataatgtaa---ttatatttcaacttccaataatttgcatatagaagtaaccttgatcagtag |
33461829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 192
Target Start/End: Complemental strand, 33574277 - 33574224
Alignment:
| Q |
141 |
attatatttcaacatccattaatttgca--tatagaagtaaccttgatgagtag |
192 |
Q |
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| T |
33574277 |
attatatttcaacttccattaatttgcatatatagaggtaaccttgatcagtag |
33574224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 94 - 192
Target Start/End: Original strand, 43999732 - 43999827
Alignment:
| Q |
94 |
agtatgaagatctaaatgaattaaatttgctgcaaaacaatgttagtattatatttcaacatccattaatttgcatatagaagtaaccttgatgagtag |
192 |
Q |
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|||||||||| ||||||||||| || ||||| ||||| ||||| | || ||||||||| |||| ||| |||||||||||||||||||| || ||||| |
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| T |
43999732 |
agtatgaagagctaaatgaattcaaattgctacaaaagaatgtaa---ttttatttcaacttccaataacttgcatatagaagtaaccttaatcagtag |
43999827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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