View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10866_low_1 (Length: 403)
Name: NF10866_low_1
Description: NF10866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10866_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 16 - 386
Target Start/End: Original strand, 4257754 - 4258127
Alignment:
| Q |
16 |
atgaaggatttgagtttttgtcatgtgatggatgaagatgttcatgaacaaatctctgatgcaatgatta---ggagattggctataaataccagttcca |
112 |
Q |
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| T |
4257754 |
atgaaggatttgagtttttgtcatgtgatggatgaagatggtcatgaacaaatctctgatgcaatgattattaggagattggctataaataccagttcca |
4257853 |
T |
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| Q |
113 |
agaatgtgctaaggagcattgaaaacttccccatacgctccctatatatatttgatgctttaataaaattttctgattactttgggagtaggttctttgc |
212 |
Q |
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| T |
4257854 |
agaatgtgctaaggagcattgaaaacttccccatacgctccctatatatattcgatgctttaataaaattatctgattactttgggagtaggttctttgc |
4257953 |
T |
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| Q |
213 |
aaagtctaagcttttgaaagtattggacttggaaggtacttggttggactatattcctgatgatcttggaaatatgtttcacttaaagtatttgagctta |
312 |
Q |
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| T |
4257954 |
aaagtctaagcttttgaaagtattggacttggaaggtacttggttggactatattcctgatgatcttggaaatatgtttcacttaaagtatttgagctta |
4258053 |
T |
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| Q |
313 |
agatataccaatgtcaagaatcttcctaaatccattggcaaactacataatctagaaaccttggacctaaaggg |
386 |
Q |
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| T |
4258054 |
agatataccaatgtcaagaatcttcctaaatccattggcaaactacataatctagaaaccttggacctaaaggg |
4258127 |
T |
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