View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10866_low_2 (Length: 328)

Name: NF10866_low_2
Description: NF10866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10866_low_2
NF10866_low_2
[»] chr7 (28 HSPs)
chr7 (193-313)||(4985324-4985444)
chr7 (193-313)||(4989422-4989542)
chr7 (193-313)||(45887910-45888030)
chr7 (194-313)||(47331883-47332002)
chr7 (195-313)||(46757307-46757425)
chr7 (195-313)||(48259246-48259364)
chr7 (195-309)||(45887279-45887393)
chr7 (193-309)||(4984807-4984922)
chr7 (196-292)||(48259769-48259865)
chr7 (199-289)||(47331260-47331351)
chr7 (260-309)||(4988971-4989020)
chr7 (209-299)||(26803215-26803305)
chr7 (194-283)||(42455811-42455899)
chr7 (195-286)||(24322308-24322399)
chr7 (194-242)||(29006346-29006394)
chr7 (194-242)||(29007200-29007248)
chr7 (194-242)||(41224844-41224892)
chr7 (202-286)||(41533903-41533987)
chr7 (202-262)||(44909340-44909400)
chr7 (195-242)||(669104-669151)
chr7 (201-242)||(29315312-29315353)
chr7 (193-242)||(38778852-38778901)
chr7 (193-242)||(41194511-41194560)
chr7 (202-242)||(20890206-20890246)
chr7 (194-242)||(29314580-29314628)
chr7 (194-242)||(37468909-37468957)
chr7 (194-242)||(37864308-37864356)
chr7 (202-242)||(44896053-44896093)
[»] chr5 (17 HSPs)
chr5 (195-313)||(2319266-2319384)
chr5 (193-313)||(2319897-2320017)
chr5 (194-313)||(26268343-26268462)
chr5 (195-313)||(26268951-26269069)
chr5 (209-306)||(25993505-25993602)
chr5 (197-306)||(39166591-39166700)
chr5 (208-306)||(25992753-25992852)
chr5 (194-286)||(33283980-33284072)
chr5 (200-286)||(33283170-33283256)
chr5 (209-306)||(461200-461297)
chr5 (193-242)||(36626631-36626680)
chr5 (194-242)||(12190159-12190207)
chr5 (195-242)||(16971034-16971081)
chr5 (209-299)||(461888-461977)
chr5 (192-242)||(8204117-8204167)
chr5 (195-276)||(13655627-13655708)
chr5 (194-242)||(33002817-33002865)
[»] chr2 (7 HSPs)
chr2 (194-313)||(41984726-41984845)
chr2 (194-283)||(41043288-41043377)
chr2 (195-242)||(14573261-14573308)
chr2 (195-242)||(16426553-16426600)
chr2 (194-276)||(5276464-5276546)
chr2 (193-242)||(21471015-21471064)
chr2 (209-257)||(23876049-23876097)
[»] chr6 (16 HSPs)
chr6 (195-309)||(29997645-29997759)
chr6 (193-309)||(29998109-29998225)
chr6 (195-283)||(4826398-4826486)
chr6 (267-313)||(26470342-26470388)
chr6 (195-283)||(26226603-26226691)
chr6 (200-243)||(10607406-10607449)
chr6 (208-286)||(9427358-9427436)
chr6 (202-242)||(10608321-10608361)
chr6 (202-241)||(930930-930969)
chr6 (195-242)||(3543064-3543111)
chr6 (195-242)||(24125972-24126019)
chr6 (193-243)||(931843-931893)
chr6 (200-242)||(3542819-3542861)
chr6 (194-254)||(1035392-1035452)
chr6 (194-242)||(7193337-7193385)
chr6 (225-277)||(21982538-21982590)
[»] chr4 (27 HSPs)
chr4 (195-313)||(55864805-55864923)
chr4 (195-313)||(55864259-55864376)
chr4 (196-295)||(25370507-25370606)
chr4 (245-313)||(36957099-36957167)
chr4 (194-243)||(46765168-46765217)
chr4 (202-286)||(38014879-38014963)
chr4 (193-243)||(11681274-11681324)
chr4 (193-243)||(11689553-11689603)
chr4 (194-276)||(47198604-47198686)
chr4 (200-242)||(52758711-52758753)
chr4 (193-242)||(25655640-25655689)
chr4 (196-267)||(3847887-3847959)
chr4 (202-242)||(11680283-11680323)
chr4 (202-242)||(11688562-11688602)
chr4 (202-242)||(12590204-12590244)
chr4 (194-242)||(26611284-26611332)
chr4 (194-242)||(31910553-31910601)
chr4 (193-243)||(12589285-12589335)
chr4 (200-242)||(38143738-38143780)
chr4 (202-236)||(49398419-49398453)
chr4 (194-276)||(55160034-55160115)
chr4 (200-237)||(25654729-25654766)
chr4 (200-241)||(26610350-26610391)
chr4 (194-242)||(11417686-11417734)
chr4 (194-242)||(29651333-29651381)
chr4 (202-242)||(46764259-46764299)
chr4 (194-242)||(47377599-47377647)
[»] chr1 (8 HSPs)
chr1 (194-306)||(8561673-8561785)
chr1 (200-241)||(49611562-49611603)
chr1 (194-242)||(45065387-45065435)
chr1 (195-274)||(42384123-42384202)
chr1 (225-286)||(7463445-7463506)
chr1 (193-242)||(51974435-51974484)
chr1 (194-242)||(45064685-45064733)
chr1 (194-242)||(51987826-51987874)
[»] scaffold0136 (1 HSPs)
scaffold0136 (195-306)||(20648-20759)
[»] chr8 (10 HSPs)
chr8 (209-306)||(33608414-33608511)
chr8 (193-276)||(61452-61535)
chr8 (195-276)||(1365829-1365910)
chr8 (195-295)||(43924490-43924590)
chr8 (194-242)||(34992265-34992313)
chr8 (202-261)||(27918029-27918088)
chr8 (193-276)||(39255719-39255802)
chr8 (195-242)||(41092172-41092219)
chr8 (202-242)||(41348151-41348191)
chr8 (194-242)||(41859309-41859357)
[»] chr3 (8 HSPs)
chr3 (223-299)||(8327128-8327204)
chr3 (223-299)||(8326509-8326586)
chr3 (194-242)||(46719660-46719708)
chr3 (194-286)||(38337434-38337526)
chr3 (217-286)||(11442112-11442182)
chr3 (192-242)||(36750438-36750488)
chr3 (195-285)||(38336944-38337034)
chr3 (193-241)||(41755497-41755545)
[»] scaffold0155 (1 HSPs)
scaffold0155 (195-242)||(17339-17386)
[»] scaffold0311 (1 HSPs)
scaffold0311 (194-242)||(161-209)


Alignment Details
Target: chr7 (Bit Score: 117; Significance: 1e-59; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 193 - 313
Target Start/End: Complemental strand, 4985444 - 4985324
Alignment:
Q  193 taggtggcatttaatttgggaaatgctagttttttcccaccatgggaaagctttttctgaccattggatctaataaagaacacatctttatcatgaactc 292  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4985444 taggtgacatttaatttgggaaatgctagttttttcccaccatgggaaagctttttctgaccattggatctaataaagaacacatctttatcatgaactc 4985345  T
Q  293 tcagtatcaaatctccctcac 313  Q
    |||||||||||||||||||||    
T  4985344 tcagtatcaaatctccctcac 4985324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 193 - 313
Target Start/End: Complemental strand, 4989542 - 4989422
Alignment:
Q  193 taggtggcatttaatttgggaaatgctagttttttcccaccatgggaaagctttttctgaccattggatctaataaagaacacatctttatcatgaactc 292  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4989542 taggtgacatttaatttgggaaatgctagttttttcccaccatgggaaagctttttctgaccattggatctaataaagaacacatctttatcatgaactc 4989443  T
Q  293 tcagtatcaaatctccctcac 313  Q
    |||||||||||||||||||||    
T  4989442 tcagtatcaaatctccctcac 4989422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 193 - 313
Target Start/End: Complemental strand, 45888030 - 45887910
Alignment:
Q  193 taggtggcatttaatttgggaaatgctagttttttcccaccatgggaaagctttttctgaccattggatctaataaagaacacatctttatcatgaactc 292  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45888030 taggtggcatttaatttgggaaaggctagttttttcccaccatgggaaagctttttctgaccattggatctaataaagaacacatctttatcatgaactc 45887931  T
Q  293 tcagtatcaaatctccctcac 313  Q
    |||||||||||||||||||||    
T  45887930 tcagtatcaaatctccctcac 45887910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 194 - 313
Target Start/End: Complemental strand, 47332002 - 47331883
Alignment:
Q  194 aggtggcatttaatttgggaaatgctagttttttcccaccatgggaaagctttttctgaccattggatctaataaagaacacatctttatcatgaactct 293  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47332002 aggtgacatttaatttgggaaaggctagttttttcccaccatgggaaagctttttctgaccattggatctaataaagaacacatctttatcatgaactct 47331903  T
Q  294 cagtatcaaatctccctcac 313  Q
    ||||||||||||||||||||    
T  47331902 cagtatcaaatctccctcac 47331883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 195 - 313
Target Start/End: Complemental strand, 46757425 - 46757307
Alignment:
Q  195 ggtggcatttaatttgggaaatgctagttttttcccaccatgggaaagctttttctgaccattggatctaataaagaacacatctttatcatgaactctc 294  Q
    |||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46757425 ggtggcatttaatttgggaaagactagtttttccccaccatgggaaagctttttctgaccattggatctaataaagaacacatctttatcatgaactctc 46757326  T
Q  295 agtatcaaatctccctcac 313  Q
    |||||||||||||||||||    
T  46757325 agtatcaaatctccctcac 46757307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 195 - 313
Target Start/End: Original strand, 48259246 - 48259364
Alignment:
Q  195 ggtggcatttaatttgggaaatgctagttttttcccaccatgggaaagctttttctgaccattggatctaataaagaacacatctttatcatgaactctc 294  Q
    |||||||||||||||||||||  |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48259246 ggtggcatttaatttgggaaagactagttttttcccaccataggaaagctttttctgaccattggatctaataaagaacacatctttatcatgaactctc 48259345  T
Q  295 agtatcaaatctccctcac 313  Q
    |||||||||||||||||||    
T  48259346 agtatcaaatctccctcac 48259364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 195 - 309
Target Start/End: Original strand, 45887279 - 45887393
Alignment:
Q  195 ggtggcatttaatttgggaaatgctagttttttcccaccatgggaaagctttttctgaccattggatctaataaagaacacatctttatcatgaactctc 294  Q
    |||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  45887279 ggtggcgtttaatttgggaaaggctagttttttcccaccatgggaaagctttttttgaccattggatctaataaagaacacatctttatcatgaactctc 45887378  T
Q  295 agtatcaaatctccc 309  Q
    |||||||||||||||    
T  45887379 agtatcaaatctccc 45887393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 193 - 309
Target Start/End: Original strand, 4984807 - 4984922
Alignment:
Q  193 taggtggcatttaatttgggaaatgctagttttttcccaccatgggaaagctttttctgaccattggatctaataaagaacacatctttatcatgaactc 292  Q
    ||||||||||||||||||||||| | ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4984807 taggtggcatttaatttgggaaaggttagttttttcc-accatggaaaagctttttctgaccattggatctaataaagaacacatctttatcatgaactc 4984905  T
Q  293 tcagtatcaaatctccc 309  Q
    |||||||||||||||||    
T  4984906 tcagtatcaaatctccc 4984922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 196 - 292
Target Start/End: Complemental strand, 48259865 - 48259769
Alignment:
Q  196 gtggcatttaatttgggaaatgctagttttttcccaccatgggaaagctttttctgaccattggatctaataaagaacacatctttatcatgaactc 292  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48259865 gtggcatttaatttgggaaatgttagttttttcccaccatgggaaaactttttctgaccattggatctaataaagaacacatctttatcatgaactc 48259769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 199 - 289
Target Start/End: Original strand, 47331260 - 47331351
Alignment:
Q  199 gcatttaatttgggaaatgct-agttttttcccaccatgggaaagctttttctgaccattggatctaataaagaacacatctttatcatgaa 289  Q
    ||||||||||||||||| | | ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  47331260 gcatttaatttgggaaaaggttagttttttcccaccatgagaaagttttttctgaccattggatctaataaagaacacatctttatcatgaa 47331351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 260 - 309
Target Start/End: Original strand, 4988971 - 4989020
Alignment:
Q  260 atctaataaagaacacatctttatcatgaactctcagtatcaaatctccc 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4988971 atctaataaagaacacatctttatcatgaactctcagtatcaaatctccc 4989020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 209 - 299
Target Start/End: Complemental strand, 26803305 - 26803215
Alignment:
Q  209 tgggaaatgctagttttttcccaccatgggaaagctttttctgaccattggatctaataaagaacacatctttatcatgaactctcagtat 299  Q
    ||||||| | ||||||||| |||||||| |||||||||||||  ||||| |||| | ||||||||||||||||||||||  ||||||||||    
T  26803305 tgggaaagggtagtttttttccaccatgagaaagctttttctatccattagatcaagtaaagaacacatctttatcatggtctctcagtat 26803215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 194 - 283
Target Start/End: Complemental strand, 42455899 - 42455811
Alignment:
Q  194 aggtggcatttaatttgggaaatgctagttttttcccaccatgggaaagctttttctgaccattggatctaataaagaacacatctttat 283  Q
    |||||||||||||||||||||| ||||||||||| |||| |||| ||| |||||||||||||||| ||| | |  |||||||||||||||    
T  42455899 aggtggcatttaatttgggaaaggctagtttttt-ccactatggaaaaactttttctgaccattgaatcgagtgtagaacacatctttat 42455811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 195 - 286
Target Start/End: Complemental strand, 24322399 - 24322308
Alignment:
Q  195 ggtggcatttaatttgggaaatgctagttttttcccaccatgggaaagctttttctgaccattggatctaataaagaacacatctttatcat 286  Q
    |||| |||||||||||||||| | ||||||| |||||||||||||||| ||||| ||||| || |||| ||| | |||||||| ||||||||    
T  24322399 ggtgccatttaatttgggaaaggttagttttatcccaccatgggaaaggtttttttgaccgttagatcaaatgaggaacacatttttatcat 24322308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 29006346 - 29006394
Alignment:
Q  194 aggtggcatttaatttgggaaatgctagttttttcccaccatgggaaag 242  Q
    ||||| |||||||||||||||| ||| ||||||||||||||||||||||    
T  29006346 aggtgccatttaatttgggaaaggcttgttttttcccaccatgggaaag 29006394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 29007248 - 29007200
Alignment:
Q  194 aggtggcatttaatttgggaaatgctagttttttcccaccatgggaaag 242  Q
    ||||| |||||||||||||||| ||| ||||||||||||||||||||||    
T  29007248 aggtgtcatttaatttgggaaaggcttgttttttcccaccatgggaaag 29007200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 41224892 - 41224844
Alignment:
Q  194 aggtggcatttaatttgggaaatgctagttttttcccaccatgggaaag 242  Q
    ||||| |||||||||||||||| |||  |||||||||||||||||||||    
T  41224892 aggtgccatttaatttgggaaaggcttattttttcccaccatgggaaag 41224844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 286
Target Start/End: Original strand, 41533903 - 41533987
Alignment:
Q  202 tttaatttgggaaatgctagttttttcccaccatgggaaagctttttctgaccattggatctaataaagaacacatctttatcat 286  Q
    |||||||||||||| |  |||||||| |||||||||||||| ||||| || || ||||||| ||| | |||||||| || |||||    
T  41533903 tttaatttgggaaaggtaagtttttttccaccatgggaaaggtttttttggccgttggatcaaatgaggaacacattttaatcat 41533987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 262
Target Start/End: Complemental strand, 44909400 - 44909340
Alignment:
Q  202 tttaatttgggaaatgctagttttttcccaccatgggaaagctttttctgaccattggatc 262  Q
    |||||||||||||| |  ||||||||||||||||||||||| ||||| || || |||||||    
T  44909400 tttaatttgggaaaggtaagttttttcccaccatgggaaaggtttttttggccgttggatc 44909340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 242
Target Start/End: Complemental strand, 669151 - 669104
Alignment:
Q  195 ggtggcatttaatttgggaaatgctagttttttcccaccatgggaaag 242  Q
    |||| ||||||||||||||||||  |||||||||||||||| ||||||    
T  669151 ggtgccatttaatttgggaaatgagagttttttcccaccataggaaag 669104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 242
Target Start/End: Complemental strand, 29315353 - 29315312
Alignment:
Q  201 atttaatttgggaaatgctagttttttcccaccatgggaaag 242  Q
    |||||||||||||||  |||||||||||||| ||||||||||    
T  29315353 atttaatttgggaaagactagttttttcccatcatgggaaag 29315312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 242
Target Start/End: Original strand, 38778852 - 38778901
Alignment:
Q  193 taggtggcatttaatttgggaaatgctagttttttcccaccatgggaaag 242  Q
    |||||| |||||||||||||||| |  |||| ||||||||||||||||||    
T  38778852 taggtgccatttaatttgggaaaggagagttctttcccaccatgggaaag 38778901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 242
Target Start/End: Original strand, 41194511 - 41194560
Alignment:
Q  193 taggtggcatttaatttgggaaatgctagttttttcccaccatgggaaag 242  Q
    |||||| |||||||||||||||| |  |||| ||||||||||||||||||    
T  41194511 taggtgccatttaatttgggaaaggagagttctttcccaccatgggaaag 41194560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 242
Target Start/End: Original strand, 20890206 - 20890246
Alignment:
Q  202 tttaatttgggaaatgctagttttttcccaccatgggaaag 242  Q
    |||||||||||||| |  |||||||||||||||||||||||    
T  20890206 tttaatttgggaaaggacagttttttcccaccatgggaaag 20890246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 29314580 - 29314628
Alignment:
Q  194 aggtggcatttaatttgggaaatgctagttttttcccaccatgggaaag 242  Q
    ||||| ||||||||||| |||| ||| ||||||| ||||||||||||||    
T  29314580 aggtgccatttaatttgagaaaggcttgtttttttccaccatgggaaag 29314628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 37468909 - 37468957
Alignment:
Q  194 aggtggcatttaatttgggaaatgctagttttttcccaccatgggaaag 242  Q
    ||||| |||||||||||||||| |  |||| ||||||||||||||||||    
T  37468909 aggtgccatttaatttgggaaaggagagttctttcccaccatgggaaag 37468957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 37864356 - 37864308
Alignment:
Q  194 aggtggcatttaatttgggaaatgctagttttttcccaccatgggaaag 242  Q
    ||||| |||||||||||||||||   |||| ||||||||||||||||||    
T  37864356 aggtgccatttaatttgggaaataagagttctttcccaccatgggaaag 37864308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 242
Target Start/End: Original strand, 44896053 - 44896093
Alignment:
Q  202 tttaatttgggaaatgctagttttttcccaccatgggaaag 242  Q
    ||||||||||||||  ||||||||| |||||||||||||||    
T  44896053 tttaatttgggaaagactagtttttccccaccatgggaaag 44896093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 115; Significance: 2e-58; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 195 - 313
Target Start/End: Original strand, 2319266 - 2319384
Alignment:
Q  195 ggtggcatttaatttgggaaatgctagttttttcccaccatgggaaagctttttctgaccattggatctaataaagaacacatctttatcatgaactctc 294  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2319266 ggtggcatttaatttgggaaaggctagttttttcccaccatgggaaagctttttctgaccattggatctaataaagaacacatctttatcatgaactctc 2319365  T
Q  295 agtatcaaatctccctcac 313  Q
    |||||||||||||||||||    
T  2319366 agtatcaaatctccctcac 2319384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 193 - 313
Target Start/End: Complemental strand, 2320017 - 2319897
Alignment:
Q  193 taggtggcatttaatttgggaaatgctagttttttcccaccatgggaaagctttttctgaccattggatctaataaagaacacatctttatcatgaactc 292  Q
    ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2320017 taggtggcatttaatttgggaaaggctagttttttcccaccataggaaagctttttctgaccattggatctaataaagaacacatctttatcatgaactc 2319918  T
Q  293 tcagtatcaaatctccctcac 313  Q
    |||||||||||||||||||||    
T  2319917 tcagtatcaaatctccctcac 2319897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 194 - 313
Target Start/End: Original strand, 26268343 - 26268462
Alignment:
Q  194 aggtggcatttaatttgggaaatgctagttttttcccaccatgggaaagctttttctgaccattggatctaataaagaacacatctttatcatgaactct 293  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  26268343 aggtggcatttaatttgggaaatgttagttttttcccaccatgggaaagctttttctgaccattggatctaataaggaacacatctttatcatgaactct 26268442  T
Q  294 cagtatcaaatctccctcac 313  Q
    || |||||||||||||||||    
T  26268443 cattatcaaatctccctcac 26268462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 195 - 313
Target Start/End: Complemental strand, 26269069 - 26268951
Alignment:
Q  195 ggtggcatttaatttgggaaatgctagttttttcccaccatgggaaagctttttctgaccattggatctaataaagaacacatctttatcatgaactctc 294  Q
    ||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||| || |||| |||||||||||||||||||||| |||||||    
T  26269069 ggtggcatttaatttgggaaaggttagttttttcccatcatgggaaagctttttctgaccaatgaatctgataaagaacacatctttatcataaactctc 26268970  T
Q  295 agtatcaaatctccctcac 313  Q
    |||||||||||||||||||    
T  26268969 agtatcaaatctccctcac 26268951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 209 - 306
Target Start/End: Complemental strand, 25993602 - 25993505
Alignment:
Q  209 tgggaaatgctagttttttcccaccatgggaaagct-ttttctgaccattggatctaataaagaacacatctttatcatgaactctcagtatcaaatct 306  Q
    ||||||| |||||||||| ||||||||||||||||| ||||||||||||| |||||| | |||||||||||||||||||| ||| ||||||| ||||||    
T  25993602 tgggaaaggctagttttt-cccaccatgggaaagctcttttctgaccattagatctagtgaagaacacatctttatcatggactatcagtattaaatct 25993505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 197 - 306
Target Start/End: Original strand, 39166591 - 39166700
Alignment:
Q  197 tggcatttaatttgggaaatgctagttttttcccaccatgggaaagctttttctgaccattggatctaataaagaacacatctttatcatgaactctcag 296  Q
    |||||||||||||||||||  ||||||||||||||| |||| |||||||||||||||||||||||  | |  |||| |||||||||| ||| |||||||     
T  39166591 tggcatttaatttgggaaaaactagttttttcccactatggaaaagctttttctgaccattggattaagtgtagaatacatctttattatggactctcaa 39166690  T
Q  297 tatcaaatct 306  Q
    ||| ||||||    
T  39166691 tattaaatct 39166700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 208 - 306
Target Start/End: Original strand, 25992753 - 25992852
Alignment:
Q  208 ttgggaaatgctagttttttcccaccatgggaaagctttt--tctgaccattggatctaataaagaacacatctttatcatgaactctcagtatcaaatc 305  Q
    |||||||| |||||||||| ||||||||||||||||||||  |||||||||| |||||| | ||||||| |||||||||| | ||| ||||||| |||||    
T  25992753 ttgggaaaggctagttttt-cccaccatgggaaagctttttttctgaccattagatctagtgaagaacatatctttatcacggactgtcagtattaaatc 25992851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 194 - 286
Target Start/End: Complemental strand, 33284072 - 33283980
Alignment:
Q  194 aggtggcatttaatttgggaaatgctagttttttcccaccatgggaaagctttttctgaccattggatctaataaagaacacatctttatcat 286  Q
    ||||| |||||||||||||||| | ||||||| |||||||||||||||| ||||| ||||| || |||| ||| | |||||||| ||||||||    
T  33284072 aggtgccatttaatttgggaaaggttagttttatcccaccatgggaaaggtttttttgaccgttagatcaaatgaggaacacatttttatcat 33283980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 200 - 286
Target Start/End: Original strand, 33283170 - 33283256
Alignment:
Q  200 catttaatttgggaaatgctagttttttcccaccatgggaaagctttttctgaccattggatctaataaagaacacatctttatcat 286  Q
    |||||||||||||||| | ||||||| ||||| |||||||||| ||||| |||||||| |||| ||| | |||||||| ||||||||    
T  33283170 catttaatttgggaaaggttagttttatcccatcatgggaaaggtttttttgaccattagatcaaatgaggaacacatttttatcat 33283256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 306
Target Start/End: Original strand, 461200 - 461297
Alignment:
Q  209 tgggaaatgctagttttttcccaccatgggaaagctttt-tctgaccattggatctaataaagaacacatctttatcatgaactctcagtatcaaatct 306  Q
    ||||||| ||||||||||||| ||||||  ||||||||| |||||||| | |||||| | |||||||| ||||||||||| ||| |||| || ||||||    
T  461200 tgggaaaggctagttttttcc-accatgaaaaagcttttttctgaccaatagatctagtgaagaacacgtctttatcatggactgtcagcattaaatct 461297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 36626680 - 36626631
Alignment:
Q  193 taggtggcatttaatttgggaaatgctagttttttcccaccatgggaaag 242  Q
    |||||| ||||||||||||||||||  |||| ||||||||||||||||||    
T  36626680 taggtgccatttaatttgggaaatgagagttctttcccaccatgggaaag 36626631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 12190207 - 12190159
Alignment:
Q  194 aggtggcatttaatttgggaaatgctagttttttcccaccatgggaaag 242  Q
    ||||| |||||||||||||||| |  |||||||||||||||||||||||    
T  12190207 aggtgccatttaatttgggaaaagagagttttttcccaccatgggaaag 12190159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 242
Target Start/End: Complemental strand, 16971081 - 16971034
Alignment:
Q  195 ggtggcatttaatttgggaaatgctagttttttcccaccatgggaaag 242  Q
    |||| ||||||||||||||||  |||||||||||||| ||||||||||    
T  16971081 ggtgccatttaatttgggaaagactagttttttcccatcatgggaaag 16971034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 299
Target Start/End: Complemental strand, 461977 - 461888
Alignment:
Q  209 tgggaaatgctagttttttcccaccatgggaaagctttttctgaccattggatctaataaagaacacatctttatcatgaactctcagtat 299  Q
    ||||||| ||||||||||||| |||||||||||     |||| |||||| |||||| | |||||||| ||||||||||| ||| |||||||    
T  461977 tgggaaaggctagttttttcc-accatgggaaaaaaaattcttaccattagatctagtgaagaacacgtctttatcatggactgtcagtat 461888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 242
Target Start/End: Original strand, 8204117 - 8204167
Alignment:
Q  192 ctaggtggcatttaatttgggaaatgctagttttttcccaccatgggaaag 242  Q
    ||||||| |||||||||||||||| |  |||| ||||||||||||||||||    
T  8204117 ctaggtgccatttaatttgggaaaggagagttctttcccaccatgggaaag 8204167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 276
Target Start/End: Complemental strand, 13655708 - 13655627
Alignment:
Q  195 ggtggcatttaatttgggaaatgctagttttttcccaccatgggaaagctttttctgaccattggatctaataaagaacaca 276  Q
    ||||||||||||||||||||| |  | || |||||||  |||||||||  |||||| |||||||||||  | ||||||||||    
T  13655708 ggtggcatttaatttgggaaaagagacttctttcccattatgggaaagtcttttctaaccattggatcatacaaagaacaca 13655627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 33002865 - 33002817
Alignment:
Q  194 aggtggcatttaatttgggaaatgctagttttttcccaccatgggaaag 242  Q
    ||||| |||||||||||||||| |  |||| ||||||||||||||||||    
T  33002865 aggtgtcatttaatttgggaaaggagagttctttcccaccatgggaaag 33002817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 100; Significance: 2e-49; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 194 - 313
Target Start/End: Original strand, 41984726 - 41984845
Alignment:
Q  194 aggtggcatttaatttgggaaatgctagttttttcccaccatgggaaagctttttctgaccattggatctaataaagaacacatctttatcatgaactct 293  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||    
T  41984726 aggtggcatttaatttgggaaaggctagttttttctcaccatgggaaagctatttctgaccattagatctaataaagaacacatctttatcataaactct 41984825  T
Q  294 cagtatcaaatctccctcac 313  Q
    ||||||||||||||||||||    
T  41984826 cagtatcaaatctccctcac 41984845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 194 - 283
Target Start/End: Complemental strand, 41043377 - 41043288
Alignment:
Q  194 aggtggcatttaatttgggaaatgctagttttttcccaccatgggaaagctttttctgaccattggatctaataaagaacacatctttat 283  Q
    |||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||| ||| | |  |||||||||||||||    
T  41043377 aggtggcatttaatttgggaaaggctagttttttcccatcatggaaaagctttttctgaccattgaatcaagtgtagaacacatctttat 41043288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 242
Target Start/End: Original strand, 14573261 - 14573308
Alignment:
Q  195 ggtggcatttaatttgggaaatgctagttttttcccaccatgggaaag 242  Q
    |||| |||||||||||||||| |  |||||||||||||||||||||||    
T  14573261 ggtgccatttaatttgggaaaggagagttttttcccaccatgggaaag 14573308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 242
Target Start/End: Original strand, 16426553 - 16426600
Alignment:
Q  195 ggtggcatttaatttgggaaatgctagttttttcccaccatgggaaag 242  Q
    |||| |||||||||||||||| ||| ||||||||||||||||| ||||    
T  16426553 ggtgccatttaatttgggaaaggcttgttttttcccaccatggaaaag 16426600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 276
Target Start/End: Original strand, 5276464 - 5276546
Alignment:
Q  194 aggtggcatttaatttgggaaatgctagttttttcccaccatgggaaagctttttctgaccattggatctaataaagaacaca 276  Q
    ||||||||||||| |||||||| |  | || ||||||||||||||||||  |||||| | |||||||||  | ||||||||||    
T  5276464 aggtggcatttaacttgggaaaggagacttctttcccaccatgggaaagtcttttctaatcattggatcatacaaagaacaca 5276546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 242
Target Start/End: Original strand, 21471015 - 21471064
Alignment:
Q  193 taggtggcatttaatttgggaaatgctagttttttcccaccatgggaaag 242  Q
    |||||| |||||||||||||||| |  |||| ||||||||||||||||||    
T  21471015 taggtgccatttaatttgggaaaggagagttctttcccaccatgggaaag 21471064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 257
Target Start/End: Complemental strand, 23876097 - 23876049
Alignment:
Q  209 tgggaaatgctagttttttcccaccatgggaaagctttttctgaccatt 257  Q
    |||||||||  |||| |||||||||||||||||| ||||| ||||||||    
T  23876097 tgggaaatgggagttgtttcccaccatgggaaagatttttatgaccatt 23876049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 95; Significance: 2e-46; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 195 - 309
Target Start/End: Original strand, 29997645 - 29997759
Alignment:
Q  195 ggtggcatttaatttgggaaatgctagttttttcccaccatgggaaagctttttctgaccattggatctaataaagaacacatctttatcatgaactctc 294  Q
    |||||||||||||||||||||   ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  29997645 ggtggcatttaatttgggaaagattagtttttttccaccatgggaaagctttttctgaccattgaatctaataaagaacacatctttatcatgaactctc 29997744  T
Q  295 agtatcaaatctccc 309  Q
    |||||||||||||||    
T  29997745 agtatcaaatctccc 29997759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 193 - 309
Target Start/End: Complemental strand, 29998225 - 29998109
Alignment:
Q  193 taggtggcatttaatttgggaaatgctagttttttcccaccatgggaaagctttttctgaccattggatctaataaagaacacatctttatcatgaactc 292  Q
    ||||||||||||||||||| ||| | ||||||||| ||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  29998225 taggtggcatttaatttggaaaaggttagtttttttccatcatgggaaagctttttctgactattgaatctaataaagaacacatctttatcatgaactc 29998126  T
Q  293 tcagtatcaaatctccc 309  Q
    || ||||||||||||||    
T  29998125 tcggtatcaaatctccc 29998109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 195 - 283
Target Start/End: Original strand, 4826398 - 4826486
Alignment:
Q  195 ggtggcatttaatttgggaaatgctagttttttcccaccatgggaaagctttttctgaccattggatctaataaagaacacatctttat 283  Q
    |||||||||||||||||||||  |||||| |||||||||| ||||||||||||||||||||||||||| | |  |||||||||||||||    
T  4826398 ggtggcatttaatttgggaaagactagttatttcccaccacgggaaagctttttctgaccattggatcaagtgtagaacacatctttat 4826486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 267 - 313
Target Start/End: Original strand, 26470342 - 26470388
Alignment:
Q  267 aaagaacacatctttatcatgaactctcagtatcaaatctccctcac 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  26470342 aaagaacacatctttatcatgaactctcagtatcaaatctccctcac 26470388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 195 - 283
Target Start/End: Original strand, 26226603 - 26226691
Alignment:
Q  195 ggtggcatttaatttgggaaatgctagttttttcccaccatgggaaagctttttctgaccattggatctaataaagaacacatctttat 283  Q
    ||||| ||||||||||||||| | ||||||||| ||||||| | |||||||||||||| ||||| ||| | |  |||||||||||||||    
T  26226603 ggtggtatttaatttgggaaaggttagtttttttccaccatagaaaagctttttctgaacattgaatcaagtgtagaacacatctttat 26226691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 200 - 243
Target Start/End: Original strand, 10607406 - 10607449
Alignment:
Q  200 catttaatttgggaaatgctagttttttcccaccatgggaaagc 243  Q
    ||||||||||||||||  ||||||||||||||||||||||||||    
T  10607406 catttaatttgggaaagactagttttttcccaccatgggaaagc 10607449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 286
Target Start/End: Original strand, 9427358 - 9427436
Alignment:
Q  208 ttgggaaatgctagttttttcccaccatgggaaagctttttctgaccattggatctaataaagaacacatctttatcat 286  Q
    |||||||| |||||||||| ||||||||||||||| ||||| ||||| || |||| ||| | |||||||| || |||||    
T  9427358 ttgggaaaggctagtttttccccaccatgggaaaggtttttttgaccgttagatcaaatgaggaacacattttaatcat 9427436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 242
Target Start/End: Complemental strand, 10608361 - 10608321
Alignment:
Q  202 tttaatttgggaaatgctagttttttcccaccatgggaaag 242  Q
    |||||||||||||| ||| ||||||||||||||||||||||    
T  10608361 tttaatttgggaaaggctggttttttcccaccatgggaaag 10608321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 202 - 241
Target Start/End: Original strand, 930930 - 930969
Alignment:
Q  202 tttaatttgggaaatgctagttttttcccaccatgggaaa 241  Q
    ||||||||||||||  ||||||||||||||||||||||||    
T  930930 tttaatttgggaaagactagttttttcccaccatgggaaa 930969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 242
Target Start/End: Complemental strand, 3543111 - 3543064
Alignment:
Q  195 ggtggcatttaatttgggaaatgctagttttttcccaccatgggaaag 242  Q
    |||| |||||||||||||||| |  |||||||||||||||||||||||    
T  3543111 ggtgccatttaatttgggaaaggagagttttttcccaccatgggaaag 3543064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 242
Target Start/End: Original strand, 24125972 - 24126019
Alignment:
Q  195 ggtggcatttaatttgggaaatgctagttttttcccaccatgggaaag 242  Q
    ||||||||||||||||||||| |  |||| ||||||||||||||||||    
T  24125972 ggtggcatttaatttgggaaaggggagttgtttcccaccatgggaaag 24126019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 243
Target Start/End: Complemental strand, 931893 - 931843
Alignment:
Q  193 taggtggcatttaatttgggaaatgctagttttttcccaccatgggaaagc 243  Q
    ||||||||||||||||| | |||   |||||||||||||||||||||||||    
T  931893 taggtggcatttaatttagaaaagattagttttttcccaccatgggaaagc 931843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 242
Target Start/End: Original strand, 3542819 - 3542861
Alignment:
Q  200 catttaatttgggaaatgctagttttttcccaccatgggaaag 242  Q
    |||||||||||||||| |  |||||||||||||||||||||||    
T  3542819 catttaatttgggaaaggagagttttttcccaccatgggaaag 3542861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 254
Target Start/End: Complemental strand, 1035452 - 1035392
Alignment:
Q  194 aggtggcatttaatttgggaaatgctagttttttcccaccatgggaaagctttttctgacc 254  Q
    ||||| |||||||||||| ||| | || |||||||||| |||||||||| ||||| |||||    
T  1035452 aggtgccatttaatttggaaaaggttaattttttcccatcatgggaaagatttttttgacc 1035392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 7193337 - 7193385
Alignment:
Q  194 aggtggcatttaatttgggaaatgctagttttttcccaccatgggaaag 242  Q
    ||||| |||||||||||||||| |  |||| ||||||||||||||||||    
T  7193337 aggtgccatttaatttgggaaaggagagttctttcccaccatgggaaag 7193385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 277
Target Start/End: Original strand, 21982538 - 21982590
Alignment:
Q  225 tttcccaccatgggaaagctttttctgaccattggatctaataaagaacacat 277  Q
    ||||| |||||||||||| ||||| |||||||| |||| ||||| ||||||||    
T  21982538 tttccgaccatgggaaagatttttttgaccattagatcaaataaggaacacat 21982590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 195 - 313
Target Start/End: Complemental strand, 55864923 - 55864805
Alignment:
Q  195 ggtggcatttaatttgggaaatgctagttttttcccaccatgggaaagctttttctgaccattggatctaataaagaacacatctttatcatgaactctc 294  Q
    |||||||||||||||  |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  55864923 ggtggcatttaatttaagaaaggctagttttttcccaccatggaaaagctttttctgaccattggatctaataaagaatacatctttatcatgaactctc 55864824  T
Q  295 agtatcaaatctccctcac 313  Q
    | |||||||||||||||||    
T  55864823 aatatcaaatctccctcac 55864805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 195 - 313
Target Start/End: Original strand, 55864259 - 55864376
Alignment:
Q  195 ggtggcatttaatttgggaaatgctagttttttcccaccatgggaaagctttttctgaccattggatctaataaagaacacatctttatcatgaactctc 294  Q
    |||| ||||||||||||||||||||||||||| ||||  |||  |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  55864259 ggtgacatttaatttgggaaatgctagttttt-cccataatgaaaaagctttttctgaccattggatctaataaagaacacatctttatcctgaattctc 55864357  T
Q  295 agtatcaaatctccctcac 313  Q
    |||||||||||||||||||    
T  55864358 agtatcaaatctccctcac 55864376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 196 - 295
Target Start/End: Original strand, 25370507 - 25370606
Alignment:
Q  196 gtggcatttaatttgggaaatgctagttttttcccaccatgggaaagctttttctgaccattggatctaataaagaacacatctttatcatgaactctca 295  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| | |  ||||||||||||||| ||| |||||||    
T  25370507 gtggcatttaatttgggaaaggctagttttttcccaccatgggaaagctttttctgaccattagatcaagtgtagaacacatctttattatggactctca 25370606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 245 - 313
Target Start/End: Original strand, 36957099 - 36957167
Alignment:
Q  245 ttttctgaccattggatctaataaagaacacatctttatcatgaactctcagtatcaaatctccctcac 313  Q
    ||||||||||| | |||||||||||||||| |||||||| ||||||||||| |||||||||||||||||    
T  36957099 ttttctgaccaatagatctaataaagaacagatctttattatgaactctcaatatcaaatctccctcac 36957167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 194 - 243
Target Start/End: Complemental strand, 46765217 - 46765168
Alignment:
Q  194 aggtggcatttaatttgggaaatgctagttttttcccaccatgggaaagc 243  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  46765217 aggtggcatttaatttgggaaagactagttttttcccaccatgggaaagc 46765168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 202 - 286
Target Start/End: Complemental strand, 38014963 - 38014879
Alignment:
Q  202 tttaatttgggaaatgctagttttttcccaccatgggaaagctttttctgaccattggatctaataaagaacacatctttatcat 286  Q
    |||||||||||||| |||||||||| ||||||||||||||| ||||| ||||| || |||| ||| | |||||||| || |||||    
T  38014963 tttaatttgggaaaggctagtttttccccaccatgggaaaggtttttttgaccgttagatcaaatgaggaacacattttaatcat 38014879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 193 - 243
Target Start/End: Complemental strand, 11681324 - 11681274
Alignment:
Q  193 taggtggcatttaatttgggaaatgctagttttttcccaccatgggaaagc 243  Q
    ||||||||||||||||||| |||  ||||||||||||||||||||||||||    
T  11681324 taggtggcatttaatttggaaaagactagttttttcccaccatgggaaagc 11681274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 193 - 243
Target Start/End: Complemental strand, 11689603 - 11689553
Alignment:
Q  193 taggtggcatttaatttgggaaatgctagttttttcccaccatgggaaagc 243  Q
    ||||||||||||||||||| |||  ||||||||||||||||||||||||||    
T  11689603 taggtggcatttaatttggaaaagactagttttttcccaccatgggaaagc 11689553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 276
Target Start/End: Original strand, 47198604 - 47198686
Alignment:
Q  194 aggtggcatttaatttgggaaatgctagttttttcccaccatgggaaagctttttctgaccattggatctaataaagaacaca 276  Q
    ||||| |||||||||||||||| |  | || ||||||||||||||||||  |||||| |||||||||||  | ||||||||||    
T  47198604 aggtgacatttaatttgggaaaggagacttctttcccaccatgggaaagtcttttctaaccattggatcatacaaagaacaca 47198686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 242
Target Start/End: Complemental strand, 52758753 - 52758711
Alignment:
Q  200 catttaatttgggaaatgctagttttttcccaccatgggaaag 242  Q
    ||||||||||||||||||||||||||||| || ||||||||||    
T  52758753 catttaatttgggaaatgctagttttttctcatcatgggaaag 52758711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 25655689 - 25655640
Alignment:
Q  193 taggtggcatttaatttgggaaatgctagttttttcccaccatgggaaag 242  Q
    |||||||  ||||||||||||||  |||||||||||||||||||||||||    
T  25655689 taggtggggtttaatttgggaaagactagttttttcccaccatgggaaag 25655640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 267
Target Start/End: Original strand, 3847887 - 3847959
Alignment:
Q  196 gtggcatttaatttgggaaatgctagttttttcccaccatgggaaag-ctttttctgaccattggatctaata 267  Q
    |||||||||||||||||||| |  | |||||||||||||||||||||  ||||| |||||||| |||| ||||    
T  3847887 gtggcatttaatttgggaaaggagacttttttcccaccatgggaaagtatttttttgaccattagatcaaata 3847959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 242
Target Start/End: Original strand, 11680283 - 11680323
Alignment:
Q  202 tttaatttgggaaatgctagttttttcccaccatgggaaag 242  Q
    |||||||||||||| | ||||||||||||||||||||||||    
T  11680283 tttaatttgggaaaggttagttttttcccaccatgggaaag 11680323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 242
Target Start/End: Original strand, 11688562 - 11688602
Alignment:
Q  202 tttaatttgggaaatgctagttttttcccaccatgggaaag 242  Q
    |||||||||||||| | ||||||||||||||||||||||||    
T  11688562 tttaatttgggaaaggttagttttttcccaccatgggaaag 11688602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 242
Target Start/End: Complemental strand, 12590244 - 12590204
Alignment:
Q  202 tttaatttgggaaatgctagttttttcccaccatgggaaag 242  Q
    |||||||||||||| ||||||||||| ||||||||||||||    
T  12590244 tttaatttgggaaaggctagtttttttccaccatgggaaag 12590204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 26611332 - 26611284
Alignment:
Q  194 aggtggcatttaatttgggaaatgctagttttttcccaccatgggaaag 242  Q
    ||||| |||||||||||||||| |  |||||||||||||||||||||||    
T  26611332 aggtgtcatttaatttgggaaaggagagttttttcccaccatgggaaag 26611284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 31910553 - 31910601
Alignment:
Q  194 aggtggcatttaatttgggaaatgctagttttttcccaccatgggaaag 242  Q
    ||||| |||||||||| ||||| ||| ||||||||||||||||||||||    
T  31910553 aggtgtcatttaatttaggaaaggcttgttttttcccaccatgggaaag 31910601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 243
Target Start/End: Original strand, 12589285 - 12589335
Alignment:
Q  193 taggtggcatttaatttgggaaatgctagttttttcccaccatgggaaagc 243  Q
    |||||| ||||||||||||||||   |||||||||||||| ||||||||||    
T  12589285 taggtgacatttaatttgggaaagattagttttttcccactatgggaaagc 12589335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 242
Target Start/End: Complemental strand, 38143780 - 38143738
Alignment:
Q  200 catttaatttgggaaatgctagttttttcccaccatgggaaag 242  Q
    ||||||||||||||||||  |||| ||||||||||||||||||    
T  38143780 catttaatttgggaaatgagagttctttcccaccatgggaaag 38143738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 236
Target Start/End: Original strand, 49398419 - 49398453
Alignment:
Q  202 tttaatttgggaaatgctagttttttcccaccatg 236  Q
    |||||||||||||||| ||||||||||||||||||    
T  49398419 tttaatttgggaaatgttagttttttcccaccatg 49398453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 276
Target Start/End: Complemental strand, 55160115 - 55160034
Alignment:
Q  194 aggtggcatttaatttgggaaatgctagttttttcccaccatgggaaagctttttctgaccattggatctaataaagaacaca 276  Q
    |||||||||||||||||||||| |  |  |||||| |||||||||||||  |||||| | |||||||||  ||||||||||||    
T  55160115 aggtggcatttaatttgggaaaggaga-ctttttctcaccatgggaaagtcttttctaatcattggatcatataaagaacaca 55160034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 237
Target Start/End: Original strand, 25654729 - 25654766
Alignment:
Q  200 catttaatttgggaaatgctagttttttcccaccatgg 237  Q
    ||||||||||||||||  ||||||||||||||||||||    
T  25654729 catttaatttgggaaagactagttttttcccaccatgg 25654766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 241
Target Start/End: Original strand, 26610350 - 26610391
Alignment:
Q  200 catttaatttgggaaatgctagttttttcccaccatgggaaa 241  Q
    ||||||||||||||||||  |||| |||||||||||||||||    
T  26610350 catttaatttgggaaatgagagttctttcccaccatgggaaa 26610391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 11417686 - 11417734
Alignment:
Q  194 aggtggcatttaatttgggaaatgctagttttttcccaccatgggaaag 242  Q
    ||||| |||||||||||||||| |  |||| ||||||||||||||||||    
T  11417686 aggtgccatttaatttgggaaaggagagttctttcccaccatgggaaag 11417734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 29651381 - 29651333
Alignment:
Q  194 aggtggcatttaatttgggaaatgctagttttttcccaccatgggaaag 242  Q
    ||||| |||||||||||||||| |  |||| ||||||||||||||||||    
T  29651381 aggtgccatttaatttgggaaaggagagttctttcccaccatgggaaag 29651333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 242
Target Start/End: Original strand, 46764259 - 46764299
Alignment:
Q  202 tttaatttgggaaatgctagttttttcccaccatgggaaag 242  Q
    |||||||||| |||  |||||||||||||||||||||||||    
T  46764259 tttaatttggaaaagactagttttttcccaccatgggaaag 46764299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 47377647 - 47377599
Alignment:
Q  194 aggtggcatttaatttgggaaatgctagttttttcccaccatgggaaag 242  Q
    ||||| |||||||||||||||| |  |||| ||||||||||||||||||    
T  47377647 aggtgccatttaatttgggaaaggggagttgtttcccaccatgggaaag 47377599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 4e-26; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 194 - 306
Target Start/End: Complemental strand, 8561785 - 8561673
Alignment:
Q  194 aggtggcatttaatttgggaaatgctagttttttcccaccatgggaaagctttttctgaccattggatctaataaagaacacatctttatcatgaactct 293  Q
    ||||| ||||||||||||||||  |||||||||||||| |||||||||||||||||||||||||||||| | |  | ||||||||||||| ||| |||||    
T  8561785 aggtgacatttaatttgggaaagactagttttttcccatcatgggaaagctttttctgaccattggatcaagtgtataacacatctttattatggactct 8561686  T
Q  294 cagtatcaaatct 306  Q
    || ||| ||||||    
T  8561685 caatattaaatct 8561673  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 200 - 241
Target Start/End: Complemental strand, 49611603 - 49611562
Alignment:
Q  200 catttaatttgggaaatgctagttttttcccaccatgggaaa 241  Q
    |||||||||||||||| ||||||||||||||| |||||||||    
T  49611603 catttaatttgggaaaggctagttttttcccatcatgggaaa 49611562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 45065435 - 45065387
Alignment:
Q  194 aggtggcatttaatttgggaaatgctagttttttcccaccatgggaaag 242  Q
    ||||| |||||||||||| ||| ||| ||||||||||||||||||||||    
T  45065435 aggtgccatttaatttggaaaaagcttgttttttcccaccatgggaaag 45065387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 274
Target Start/End: Complemental strand, 42384202 - 42384123
Alignment:
Q  195 ggtggcatttaatttgggaaatgctagttttttcccaccatgggaaagctttttctgaccattggatctaataaagaaca 274  Q
    ||||||||||| | ||||||| | || || ||||| | |||||||||| |||||||||||||| ||| |||||| |||||    
T  42384202 ggtggcatttagtatgggaaaggatacttgtttcctatcatgggaaagttttttctgaccattagatttaataaggaaca 42384123  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 286
Target Start/End: Original strand, 7463445 - 7463506
Alignment:
Q  225 tttcccaccatgggaaagctttttctgaccattggatctaataaagaacacatctttatcat 286  Q
    ||||||||||||||||||||  || |||||||| |||  |||||||||||||  ||||||||    
T  7463445 tttcccaccatgggaaagctaattttgaccattagattaaataaagaacacagttttatcat 7463506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 242
Target Start/End: Original strand, 51974435 - 51974484
Alignment:
Q  193 taggtggcatttaatttgggaaatgctagttttttcccaccatgggaaag 242  Q
    |||||| |||||||||||||||| |  |||| ||||||||||||||||||    
T  51974435 taggtgccatttaatttgggaaaggagagttctttcccaccatgggaaag 51974484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 45064685 - 45064733
Alignment:
Q  194 aggtggcatttaatttgggaaatgctagttttttcccaccatgggaaag 242  Q
    ||||| ||||||||||||||||   ||||||||||||| ||||||||||    
T  45064685 aggtgccatttaatttgggaaagattagttttttcccatcatgggaaag 45064733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 51987826 - 51987874
Alignment:
Q  194 aggtggcatttaatttgggaaatgctagttttttcccaccatgggaaag 242  Q
    |||||||||||||||||||||| |  | || ||||||||||||||||||    
T  51987826 aggtggcatttaatttgggaaaggagacttctttcccaccatgggaaag 51987874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 195 - 306
Target Start/End: Original strand, 20648 - 20759
Alignment:
Q  195 ggtggcatttaatttgggaaatgctagttttttcccaccatgggaaagctttttctgaccattggatctaataaagaacacatctttatcatgaactctc 294  Q
    ||||||||||||||||| ||| |||| |||||| |||||||||||||| ||||||||||||||||||| | |  ||||||||||||||| ||| ||||||    
T  20648 ggtggcatttaatttggaaaaggctactttttttccaccatgggaaagatttttctgaccattggatcaagtgtagaacacatctttattatggactctc 20747  T
Q  295 agtatcaaatct 306  Q
    | ||| ||||||    
T  20748 aatattaaatct 20759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 209 - 306
Target Start/End: Original strand, 33608414 - 33608511
Alignment:
Q  209 tgggaaatgctagttttttcccaccatgggaaagctttt-tctgaccattggatctaataaagaacacatctttatcatgaactctcagtatcaaatct 306  Q
    |||||||||||||||||| ||||| || ||||||||||| |||||||||| |||||||| |||||||| ||||||||||| ||| ||||||| ||||||    
T  33608414 tgggaaatgctagttttt-cccactataggaaagcttttttctgaccattagatctaatgaagaacacgtctttatcatggactgtcagtattaaatct 33608511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 193 - 276
Target Start/End: Original strand, 61452 - 61535
Alignment:
Q  193 taggtggcatttaatttgggaaatgctagttttttcccaccatgggaaagctttttctgaccattggatctaataaagaacaca 276  Q
    ||||||||||||||||||||||| |  | || ||||||||||||||||||  |||||| |||||||||||  | ||||||||||    
T  61452 taggtggcatttaatttgggaaaggagacttctttcccaccatgggaaagtcttttctaaccattggatcatacaaagaacaca 61535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 276
Target Start/End: Original strand, 1365829 - 1365910
Alignment:
Q  195 ggtggcatttaatttgggaaatgctagttttttcccaccatgggaaagctttttctgaccattggatctaataaagaacaca 276  Q
    ||||||||||||||||||||| |  | || ||||||||||||||||||  |||||| |||||||||||  | ||||||||||    
T  1365829 ggtggcatttaatttgggaaaggagacttctttcccaccatgggaaagtcttttctaaccattggatcatacaaagaacaca 1365910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 195 - 295
Target Start/End: Original strand, 43924490 - 43924590
Alignment:
Q  195 ggtggcatttaatttgggaaatgctagttttttcccaccatgggaaagctttttctgaccattggatctaataaagaacacatctttatcatgaactctc 294  Q
    ||||||||||||||||||||| |  |||| ||||||||||||||||||||  || ||||| || |||  |||| |||||| || |||||||| ||| |||    
T  43924490 ggtggcatttaatttgggaaagggaagttgtttcccaccatgggaaagctaattttgaccgttagattaaatagagaacatatttttatcataaacactc 43924589  T
Q  295 a 295  Q
    |    
T  43924590 a 43924590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 34992313 - 34992265
Alignment:
Q  194 aggtggcatttaatttgggaaatgctagttttttcccaccatgggaaag 242  Q
    ||||| |||||||||||||||| |  |||||||||||||||||||||||    
T  34992313 aggtgccatttaatttgggaaaggagagttttttcccaccatgggaaag 34992265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 202 - 261
Target Start/End: Complemental strand, 27918088 - 27918029
Alignment:
Q  202 tttaatttgggaaatgctagttttttcccaccatgggaaagctttttctgaccattggat 261  Q
    ||||||||||||||||  | ||||||||||||||||||||| |||||  || ||||||||    
T  27918088 tttaatttgggaaatgagacttttttcccaccatgggaaagtttttttggatcattggat 27918029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 276
Target Start/End: Complemental strand, 39255802 - 39255719
Alignment:
Q  193 taggtggcatttaatttgggaaatgctagttttttcccaccatgggaaagctttttctgaccattggatctaataaagaacaca 276  Q
    |||||||||||||| ||||||||||  | || ||||||||||||||||||  ||| || | |||||||||  | ||||||||||    
T  39255802 taggtggcatttaacttgggaaatgagacttctttcccaccatgggaaagtctttcctaatcattggatcatacaaagaacaca 39255719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 242
Target Start/End: Original strand, 41092172 - 41092219
Alignment:
Q  195 ggtggcatttaatttgggaaatgctagttttttcccaccatgggaaag 242  Q
    |||| |||||||||||||||| ||| ||||||||||||||||| ||||    
T  41092172 ggtgccatttaatttgggaaaggcttgttttttcccaccatggaaaag 41092219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 242
Target Start/End: Original strand, 41348151 - 41348191
Alignment:
Q  202 tttaatttgggaaatgctagttttttcccaccatgggaaag 242  Q
    |||||||||||||| | |||||||| |||||||||||||||    
T  41348151 tttaatttgggaaaggttagtttttccccaccatgggaaag 41348191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 41859309 - 41859357
Alignment:
Q  194 aggtggcatttaatttgggaaatgctagttttttcccaccatgggaaag 242  Q
    ||||| |||||||||||||||| |  |||| ||||||||||||||||||    
T  41859309 aggtgccatttaatttgggaaaggagagttctttcccaccatgggaaag 41859357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 223 - 299
Target Start/End: Complemental strand, 8327204 - 8327128
Alignment:
Q  223 tttttcccaccatgggaaagctttttctgaccattggatctaataaagaacacatctttatcatgaactctcagtat 299  Q
    ||||| |||||||||||||| |||||||||||||| ||| || |||||||||| ||||||||||| ||| |||||||    
T  8327204 ttttttccaccatgggaaagttttttctgaccattagatttagtaaagaacacgtctttatcatggactgtcagtat 8327128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 223 - 299
Target Start/End: Original strand, 8326509 - 8326586
Alignment:
Q  223 tttttcccaccatgggaaagcttttt-ctgaccattggatctaataaagaacacatctttatcatgaactctcagtat 299  Q
    ||||||||| |||||||||||||||| || |||||| |||||| | |||||||| ||||||||||| ||| |||||||    
T  8326509 tttttcccatcatgggaaagcttttttctaaccattagatctagtgaagaacacgtctttatcatggactgtcagtat 8326586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 46719660 - 46719708
Alignment:
Q  194 aggtggcatttaatttgggaaatgctagttttttcccaccatgggaaag 242  Q
    ||||| ||||||||||||||||||||||||||||| || ||||||||||    
T  46719660 aggtgccatttaatttgggaaatgctagttttttctcatcatgggaaag 46719708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 286
Target Start/End: Complemental strand, 38337526 - 38337434
Alignment:
Q  194 aggtggcatttaatttgggaaatgctagttttttcccaccatgggaaagctttttctgaccattggatctaataaagaacacatctttatcat 286  Q
    ||||||| |||||||||||||| |  |||| ||||||||||||||||||||  || ||||| || |||  |||| |||||| || ||||||||    
T  38337526 aggtggcgtttaatttgggaaagggaagttgtttcccaccatgggaaagctaattttgaccgttagattaaatagagaacatatttttatcat 38337434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 286
Target Start/End: Complemental strand, 11442182 - 11442112
Alignment:
Q  217 gctagttttttcccaccatgggaaagct-ttttctgaccattggatctaataaagaacacatctttatcat 286  Q
    |||| ||||||||||||||||||||| |  ||| |||||||| |||| || |||||||||||| |||||||    
T  11442182 gctacttttttcccaccatgggaaagttagtttttgaccattagatcaaacaaagaacacatccttatcat 11442112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 242
Target Start/End: Complemental strand, 36750488 - 36750438
Alignment:
Q  192 ctaggtggcatttaatttgggaaatgctagttttttcccaccatgggaaag 242  Q
    ||||||| |||||||||||||||| |  |||| ||||||||||||||||||    
T  36750488 ctaggtgccatttaatttgggaaaggagagttctttcccaccatgggaaag 36750438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 285
Target Start/End: Original strand, 38336944 - 38337034
Alignment:
Q  195 ggtggcatttaatttgggaaatgctagttttttcccaccatgggaaagctttttctgaccattggatctaataaagaacacatctttatca 285  Q
    |||||||||||||||||| || |  |||| ||||||||||||||||||||  || ||||| || |||  |||| |||||| || |||||||    
T  38336944 ggtggcatttaatttggggaagggaagttgtttcccaccatgggaaagctaattttgaccgttagattaaatagagaacatatttttatca 38337034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 241
Target Start/End: Original strand, 41755497 - 41755545
Alignment:
Q  193 taggtggcatttaatttgggaaatgctagttttttcccaccatgggaaa 241  Q
    |||||| |||||||||||||||| |  ||||||||||||||||| ||||    
T  41755497 taggtgtcatttaatttgggaaaggagagttttttcccaccatgagaaa 41755545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 242
Target Start/End: Original strand, 17339 - 17386
Alignment:
Q  195 ggtggcatttaatttgggaaatgctagttttttcccaccatgggaaag 242  Q
    |||| |||||||||||| ||| ||| ||||||||||||||||||||||    
T  17339 ggtgccatttaatttggaaaaggcttgttttttcccaccatgggaaag 17386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 209 - 161
Alignment:
Q  194 aggtggcatttaatttgggaaatgctagttttttcccaccatgggaaag 242  Q
    ||||| |||||||||||||||| |  |||| ||||||||||||||||||    
T  209 aggtgccatttaatttgggaaaggagagttctttcccaccatgggaaag 161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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