View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10866_low_4 (Length: 240)
Name: NF10866_low_4
Description: NF10866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10866_low_4 |
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| [»] scaffold0662 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 224
Target Start/End: Complemental strand, 49575163 - 49574957
Alignment:
| Q |
18 |
aatacaaggacgtaattggattcaatgaaatccctttggatgtaagcaagatttgaatcataaccaatctagtagcttcgaaagcaacagcaccaagctg |
117 |
Q |
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| T |
49575163 |
aatacaaggacgtaattggattcaatgaaatccctttggatgtaagcaagatttgaatcataaccaatctggtagcttcgaaagcaacagcaccaagctg |
49575064 |
T |
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| Q |
118 |
taaaataaccccccatgtatcaaatctagcttcaccataagcagcaacagcaacacccattgaaatggaaagcatgttaaacatggtatcatttttataa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49575063 |
taaaataaccccccatgtatcaaatctagcttcaccataagcagcaacagcaacacccattgaaatggaaagcatgttaaacatggtatcatttttataa |
49574964 |
T |
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| Q |
218 |
gattctt |
224 |
Q |
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||||||| |
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| T |
49574963 |
gattctt |
49574957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0662 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0662
Description:
Target: scaffold0662; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 174
Target Start/End: Original strand, 263 - 419
Alignment:
| Q |
18 |
aatacaaggacgtaattggattcaatgaaatccctttggatgtaagcaagatttgaatcataaccaatctagtagcttcgaaagcaacagcaccaagctg |
117 |
Q |
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||||||| || ||||| |||||||| |||||||| || || ||||||| || ||||||| |||||| | |||||||| ||||||||||| |||||| |
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| T |
263 |
aatacaacgaagtaatcggattcaacgaaatccccttagaattaagcaaaatctgaatcaaaaccaaacgtgtagcttcaaaagcaacagccataagctg |
362 |
T |
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| Q |
118 |
taaaataaccccccatgtatcaaatctagcttcaccataagcagcaacagcaacacc |
174 |
Q |
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| T |
363 |
aagtgtaacaccccaagtatcaaacttagcttcaccataagcagcaacagcaacacc |
419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 174
Target Start/End: Original strand, 47014124 - 47014280
Alignment:
| Q |
18 |
aatacaaggacgtaattggattcaatgaaatccctttggatgtaagcaagatttgaatcataaccaatctagtagcttcgaaagcaacagcaccaagctg |
117 |
Q |
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||||||| || ||||| |||||||| |||||||| || || ||||||| || ||||||| |||||| | |||||||| ||||||||||| |||||| |
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| T |
47014124 |
aatacaacgaagtaatcggattcaacgaaatccccttagaattaagcaaaatctgaatcaaaaccaaacgtgtagcttcaaaagcaacagccataagctg |
47014223 |
T |
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| Q |
118 |
taaaataaccccccatgtatcaaatctagcttcaccataagcagcaacagcaacacc |
174 |
Q |
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| T |
47014224 |
aagtgtaacaccccaagtatcaaacttagcttcaccataagcagcaacagcaacacc |
47014280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 147 - 202
Target Start/End: Original strand, 32713393 - 32713448
Alignment:
| Q |
147 |
cttcaccataagcagcaacagcaacacccattgaaatggaaagcatgttaaacatg |
202 |
Q |
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| T |
32713393 |
cttcaccataagcggcaacaaaaacacccattgaaatggaaagcatattaaacatg |
32713448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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