View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10867_high_2 (Length: 375)
Name: NF10867_high_2
Description: NF10867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10867_high_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 7 - 358
Target Start/End: Complemental strand, 31061503 - 31061152
Alignment:
| Q |
7 |
gaagcaaagatagtacccatttttcctgttggcctggagacagttttgaagcctcgagtgtttctagcaatgaagataaaagatatgtattctccgttga |
106 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||| ||||| ||||| |||||| |
|
|
| T |
31061503 |
gaagctaagatagtacccatttttcctgttggcatggagactgttttgaagccacgagtgtttctagcaatgaagataaaaaatatgaattctacgttga |
31061404 |
T |
|
| Q |
107 |
acacaccctcattacttaaagctttaaggttggcagaggagaggtttttaaatttgtttgtcaaatactatgacagagaaattgctgatgagtcgatgaa |
206 |
Q |
| |
|
| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31061403 |
aaacaccctcattacttaaagcattagggttggcagaggagaggtttttaaatttgtttgtcaaatactatgacagagaaattgctgatgagtcgatgaa |
31061304 |
T |
|
| Q |
207 |
attttataaaagagattagcatcttcatcaaagaattgtattactagactagaggattccatttgtaaactacttttatatgttttgaaagtttagaact |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31061303 |
attttataaaagagattagcatcttcatcaaagaattgtattactagactagaggattccatttgtaaactacttttatatgttttgaaagtttagaact |
31061204 |
T |
|
| Q |
307 |
aaagttgatttctgttttgtggaaattatttttctgacgcttaatactagtt |
358 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31061203 |
aaagttcatttctgttttgtggaaattatttttctgacgcttaatactagtt |
31061152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 41 - 344
Target Start/End: Complemental strand, 3414354 - 3414037
Alignment:
| Q |
41 |
tggagacagttttgaagcctcgagtgtttctagcaatgaagataaaagatatgtattctccgttgaacacaccctcattacttaaagctttaaggttggc |
140 |
Q |
| |
|
||||||| ||||||||||| ||||| |||||||||||||| || || ||||| ||||| |||| ||||||||| |||||| ||| || ||| || | |
|
|
| T |
3414354 |
tggagactgttttgaagccaagagtgcttctagcaatgaaggtacaaaatatggattctaatatgaaaacaccctcaatacttagagcattgaggatgtc |
3414255 |
T |
|
| Q |
141 |
agaggagaggtttttaaatttgtttgtcaaatactatgacagagaaattgctgatgagtcgatgaaattttataa----------------aagagatta |
224 |
Q |
| |
|
|||||||||||||| ||| |||||||| || | |||| | |||||||||||||||| ||| |||||||||| ||||||||| |
|
|
| T |
3414254 |
cgaggagaggtttttcaatacgtttgtcagatgccatgataaggaaattgctgatgagttaatggaattttataaaaggacaaaacaggtcaagagatta |
3414155 |
T |
|
| Q |
225 |
gcatcttcatcaaagaattgtattactagactagaggattccatttgtaaactacttttatatgttttga---aagtttagaactaaagttgatttctgt |
321 |
Q |
| |
|
||| |||||||| |||||| | | ||||||||||||| ||| | ||||||||||||||| ||||| ||||||||| || || ||||||||| | |
|
|
| T |
3414154 |
gcagtttcatcaaggaattggact-----actagaggattccctttctgaactacttttatatgctttgaaataagtttagagctgaatttgatttctat |
3414060 |
T |
|
| Q |
322 |
tttgtggaaattatttttctgac |
344 |
Q |
| |
|
||||||| ||||||||||||||| |
|
|
| T |
3414059 |
tttgtggtaattatttttctgac |
3414037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University