View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10867_low_2 (Length: 382)
Name: NF10867_low_2
Description: NF10867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10867_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 18 - 374
Target Start/End: Complemental strand, 24336719 - 24336363
Alignment:
| Q |
18 |
ttctccatctaatggattttgcatttgaacaagatgatttcttgagttagaagccaaactattcttttcattgtttaatcctacccttaacttctcttgc |
117 |
Q |
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| T |
24336719 |
ttctccatctaatggattttgcatttgaacaagatgatttcttgagttagaagccaaactattcttttcattgttcaatcctacccttaacttctcttgc |
24336620 |
T |
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| Q |
118 |
ttttcaaagtaaacatctttattgatcaagatttctgagctaggctttcttattctaactgaaagatcatcatcaagaccaagattaaacacttttttcg |
217 |
Q |
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| T |
24336619 |
ttttgaaagtaaacatctttattgatcaagatttctgagctaggctttcttattcttactgaaagatcatcatcaagaccaagattaaacacttttttcg |
24336520 |
T |
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| Q |
218 |
gtgttgttttaccttgaactgcaccatacttagaagttttgttattaaaactgattccacttgcatggtcatttatatcaacagaattcttatcagaaca |
317 |
Q |
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| T |
24336519 |
gcgttgttttaccttgaactgcaccatacttagaagttttgttattaaaactgatttcacttgcatggtcatttatatcaacagaattcttatcagaaca |
24336420 |
T |
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| Q |
318 |
agaacatttgagacgaagactcgatagaacactcttagcatgctctttttctctgct |
374 |
Q |
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| T |
24336419 |
agagcatttgagacgaagactcgatagaacactcttagcatgctctttttctttgct |
24336363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 268 - 327
Target Start/End: Original strand, 17745353 - 17745412
Alignment:
| Q |
268 |
ctgattccacttgcatggtcatttatatcaacagaattcttatcagaacaagaacatttg |
327 |
Q |
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| T |
17745353 |
ctgatttcacctgcatgatcacttacatcaacagaattcttatcataacaagagcatttg |
17745412 |
T |
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