View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10867_low_5 (Length: 239)
Name: NF10867_low_5
Description: NF10867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10867_low_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 146; Significance: 5e-77; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 30 - 223
Target Start/End: Complemental strand, 3676474 - 3676278
Alignment:
| Q |
30 |
aaaatcctttaattccttgcttgtggtgaataatgaata---gaataagttattgaatagtgctaacaacactctcttatcaacactatttacaaatgag |
126 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3676474 |
aaaatcctttaatttgttgcttgtggtgaataatgaataatagaataagttattgaatagtgctaacaacactctcttatcaacactatttacaaatgag |
3676375 |
T |
|
| Q |
127 |
ttataattaaaatggtgggtcatgcattgatttcatccgatnnnnnnnttagtgttgaataatcaacctaacaatggttgatactatggctacatgt |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
3676374 |
ttataattaaaatggtgggtcatgcattgatttcatccgataagaaaatgagtgttgaataaacaacctaacaatggttgatactatggctacatgt |
3676278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 3684729 - 3684682
Alignment:
| Q |
30 |
aaaatcctttaattccttgcttgtggtgaataatgaatagaataagtt |
77 |
Q |
| |
|
||||| |||| ||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
3684729 |
aaaattctttgattccttgcttttggtgaatattgaatagaataagtt |
3684682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 3696005 - 3695958
Alignment:
| Q |
30 |
aaaatcctttaattccttgcttgtggtgaataatgaatagaataagtt |
77 |
Q |
| |
|
||||| |||| ||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
3696005 |
aaaattctttgattccttgcttttggtgaatattgaatagaataagtt |
3695958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 113
Target Start/End: Original strand, 35198636 - 35198673
Alignment:
| Q |
76 |
ttattgaatagtgctaacaacactctcttatcaacact |
113 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
35198636 |
ttattgagtagtgctaacaacactctcttctcaacact |
35198673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University