View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10867_low_6 (Length: 230)
Name: NF10867_low_6
Description: NF10867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10867_low_6 |
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| [»] scaffold2079 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: scaffold2079 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: scaffold2079
Description:
Target: scaffold2079; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 35 - 230
Target Start/End: Original strand, 141 - 335
Alignment:
| Q |
35 |
cggtgtagcaaatcaattttgtaggaaaacctctttgaagctaggagaaagagatagtctcttgcaaaataacatcgatnnnnnnnngtgaatataaaag |
134 |
Q |
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| T |
141 |
cggtgtagcaaatcaattttgtaggaaaacctctttgaagtttggagaaagaaatagtctcttgcaaaataacatggataaaaaaaa-tgaatataaaag |
239 |
T |
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| Q |
135 |
aatattttggaacgcagacactacttttttgcaatattaagatagcctactatacttaatcgggtagaatttttctcatattgcgtaccccgaatc |
230 |
Q |
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| T |
240 |
aatattttggaacgcaggcactacttttttgcaatattaagatagcctactatacttaatcgggtagaatttttctcatattgcgtaccccgaatc |
335 |
T |
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Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 38 - 230
Target Start/End: Original strand, 6241962 - 6242148
Alignment:
| Q |
38 |
tgtagcaaatcaattttgtaggaaaacctctttgaagctaggagaaagagatagtctcttgcaaaataacatcgat-nnnnnnnngtgaatataaaagaa |
136 |
Q |
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| T |
6241962 |
tgtagcaaatcaattttttaagaaaacctctttgaagtttggagaaagagatagtctcttgcaaaataataacgataaaaaaaaagtgaatgtaaaagaa |
6242061 |
T |
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| Q |
137 |
tattttggaacgcagacactacttttttgcaatattaagatagcctactatacttaatcgggtagaatttttctcatattgcgtaccccgaatc |
230 |
Q |
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| T |
6242062 |
tattttgaaacgtgggcactacttttttgcaatattaagttagtctactatacttaaccggg-------tttctcatattgcgtaccgcgaatc |
6242148 |
T |
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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 108
Target Start/End: Original strand, 15641840 - 15641907
Alignment:
| Q |
41 |
agcaaatcaattttgtaggaaaacctctttgaagctaggagaaagagatagtctcttgcaaaataaca |
108 |
Q |
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| T |
15641840 |
agcaaataaattctgtaggaaaacatctttgaagcttggaggaagagaacgcctcttgcaaaataaca |
15641907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 194
Target Start/End: Complemental strand, 10850754 - 10850715
Alignment:
| Q |
155 |
ctacttttttgcaatattaagatagcctactatacttaat |
194 |
Q |
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| T |
10850754 |
ctacctttttgcaatattaagatagcttactatacttaat |
10850715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 194
Target Start/End: Complemental strand, 10878268 - 10878229
Alignment:
| Q |
155 |
ctacttttttgcaatattaagatagcctactatacttaat |
194 |
Q |
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| T |
10878268 |
ctacctttttgcaatattaagatagcttactatacttaat |
10878229 |
T |
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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 105
Target Start/End: Original strand, 15622006 - 15622057
Alignment:
| Q |
55 |
gtaggaaaacctctttgaagctaggagaaagagata-gtctcttgcaaaata |
105 |
Q |
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| T |
15622006 |
gtaggaaaacctctttgaagcttggaggaagagaaacgtctcttgcaaaata |
15622057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 105
Target Start/End: Original strand, 15643846 - 15643897
Alignment:
| Q |
55 |
gtaggaaaacctctttgaagctaggagaaagagata-gtctcttgcaaaata |
105 |
Q |
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| T |
15643846 |
gtaggaaaacctctttgaagcttggaggaagagaaacgtctcttgcaaaata |
15643897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 105
Target Start/End: Original strand, 15652896 - 15652947
Alignment:
| Q |
55 |
gtaggaaaacctctttgaagctaggagaaagagata-gtctcttgcaaaata |
105 |
Q |
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| T |
15652896 |
gtaggaaaacctctttgaagcttggaggaagagaaacgtctcttgcaaaata |
15652947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 108
Target Start/End: Complemental strand, 43724943 - 43724873
Alignment:
| Q |
38 |
tgtagcaaatcaattttgtaggaaaacctctttgaagctaggagaaagagatagtctcttgcaaaataaca |
108 |
Q |
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| T |
43724943 |
tgtagcaaataatttttgcgggaaaacctatttaaagtttggagaaagagaacgtctcttgcaaaataaca |
43724873 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 194
Target Start/End: Original strand, 16724110 - 16724148
Alignment:
| Q |
156 |
tacttttttgcaatattaagatagcctactatacttaat |
194 |
Q |
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| T |
16724110 |
tacttttttgcaatattaagatagtttactatacttaat |
16724148 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 108
Target Start/End: Complemental strand, 10682732 - 10682669
Alignment:
| Q |
44 |
aaatcaattttgtaggaaaacctctttgaagctaggagaaagagatagtctcttgcaaaataaca |
108 |
Q |
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| T |
10682732 |
aaataaattttgtag-aaaatctctttgaagcttggagaaagagaacatgtcttgcaaaataaca |
10682669 |
T |
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