View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10868_high_8 (Length: 242)
Name: NF10868_high_8
Description: NF10868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10868_high_8 |
 | |
|
| [»] scaffold1808 (1 HSPs) |
| | |
|
| [»] scaffold0105 (1 HSPs) |
| | |
|
| [»] scaffold0069 (1 HSPs) |
| | |
|
| [»] scaffold0684 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 19747351 - 19747135
Alignment:
| Q |
1 |
tgctattgtttgttgctctatgattgttgatatcattgcaagtgtttctatgctgctacctgtgactatcttgtagtttatatgtgaccactgcttaagc |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19747351 |
tgctattgtttgttgctctgtgattgttgatatcattgcaagtgtttctatgctgctacctgtgactatcttgtagtttatatgtgaccactgcttaagc |
19747252 |
T |
|
| Q |
101 |
atgcattatattgtttattttggctgaacaaaaagttgaatactattaaaggatgcgagaagatttgaagaagaaagagaaggaaaaggaatttgtagag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
19747251 |
atgcattatattgtttattttggctgaacaaaaagttgaatactattaaaggatgcgagaagatttgaagaagaaagagaaggaaaagaaatttgtagag |
19747152 |
T |
|
| Q |
201 |
tgtcaacatcttggagc |
217 |
Q |
| |
|
|||||||| |||||||| |
|
|
| T |
19747151 |
tgtcaacaacttggagc |
19747135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 10022821 - 10022604
Alignment:
| Q |
1 |
tgctattgtttgttgctctatgattgttgatatcattgcaagtgtttctatgctgcta-cctgtgactatcttgtagtttatatgtgaccactgcttaag |
99 |
Q |
| |
|
||||||||| ||| ||||| | ||||||||||||||| ||||| |||||||||||||| ||| |||||||||| || ||||||||||||||||| ||||| |
|
|
| T |
10022821 |
tgctattgtatgtcgctctgtcattgttgatatcattccaagtttttctatgctgctaacctatgactatcttataatttatatgtgaccactgattaag |
10022722 |
T |
|
| Q |
100 |
catgcattatattgtttattttggctgaacaaaaagttgaatactattaaaggatgcgagaagatttgaagaagaaagagaaggaaaaggaatttgtaga |
199 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||| | ||||||||||| ||||||||||||||||||| ||| ||||| |||||||||| |
|
|
| T |
10022721 |
catgcattatattgtttattttggtaaaacaaaaagttgaatactgtaaaaggatgcgaaaagatttgaagaagaaagacaagaaaaagaaatttgtaga |
10022622 |
T |
|
| Q |
200 |
gtgtcaacatcttggagc |
217 |
Q |
| |
|
| ||| ||| ||| |||| |
|
|
| T |
10022621 |
gcgtccacaacttagagc |
10022604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 98 - 215
Target Start/End: Original strand, 9241894 - 9242008
Alignment:
| Q |
98 |
agcatgcattatattgtttattttggctgaacaaaaagttgaatactattaaaggatgcgagaagatttgaagaagaaagagaaggaaaaggaatttgta |
197 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||||||||||||| | ||||||||| ||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
9241894 |
agcatgcattatattgtttattttggcaggacaaaaagttgaatactgtaaaaggatgc---aagatttgatgaagaaagagaaggaaaataaatttgta |
9241990 |
T |
|
| Q |
198 |
gagtgtcaacatcttgga |
215 |
Q |
| |
|
||||||||||| |||||| |
|
|
| T |
9241991 |
gagtgtcaacaacttgga |
9242008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 129; Significance: 7e-67; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 15514435 - 15514219
Alignment:
| Q |
1 |
tgctattgtttgttgctctatgattgttgatatcattgcaagtgtttctatgctgctacctgtgactatcttgtagtttatatgtgaccactgcttaagc |
100 |
Q |
| |
|
||||||||| | ||||| | ||||||||||||||||||||||| |||||||| | |||||| |||||||||| |||||||||||||| |||||||||| |
|
|
| T |
15514435 |
tgctattgtatattgctttttgattgttgatatcattgcaagtttttctatgttactacctatgactatcttatagtttatatgtgattactgcttaagt |
15514336 |
T |
|
| Q |
101 |
atgcattatattgtttattttggctgaacaaaaagttgaatactattaaaggatgcgagaagatttgaagaagaaagagaaggaaaaggaatttgtagag |
200 |
Q |
| |
|
||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
15514335 |
atgtattatattgtttattttggcaagacaaaaagttgaatactataaaaggatgcgagaagatttgaagaagaaagataaggaaaataaatttgtagag |
15514236 |
T |
|
| Q |
201 |
tgtcaacatcttggagc |
217 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
15514235 |
cgtcaacaacttggagc |
15514219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 3 - 188
Target Start/End: Complemental strand, 30267713 - 30267529
Alignment:
| Q |
3 |
ctattgtttgttgctctatgattgttgatatcattgcaagtgtttctatgctgctacctgtgactatcttgtagtttatatgtgaccactgcttaagcat |
102 |
Q |
| |
|
||||||| ||||||| | ||||||||||||||||||||||| |||||||| |||||||||||||||| || |||||||||||||||||| | ||||||| |
|
|
| T |
30267713 |
ctattgtatgttgctttgtgattgttgatatcattgcaagtttttctatgttgctacctgtgactatgttatagtttatatgtgaccaccacataagcat |
30267614 |
T |
|
| Q |
103 |
gcattatattgtttattttggctgaacaaaaagttgaatactattaaaggatgcgagaagatttgaagaagaaagagaaggaaaag |
188 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
30267613 |
gcattatattgtttgttttggcagaacaaaaagttgaatactataaaaggatgtgagaagatttgaagaagaaaga-aaggaaaag |
30267529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 74 - 190
Target Start/End: Complemental strand, 44921785 - 44921670
Alignment:
| Q |
74 |
tagtttatatgtgaccactgcttaagcatgcattatattgtttattttggctgaacaaaaagttgaatactattaaaggatgcgagaagatttgaagaag |
173 |
Q |
| |
|
||||||||||||| ||| | |||||| |||||||||||||||||||||||| |||||||||||||||||| | |||||||| ||||||||||||||||| |
|
|
| T |
44921785 |
tagtttatatgtgcccaatacttaagaatgcattatattgtttattttggcataacaaaaagttgaatactgtaaaaggatgtgagaagatttgaagaag |
44921686 |
T |
|
| Q |
174 |
aaagagaaggaaaagga |
190 |
Q |
| |
|
||||| ||||||||||| |
|
|
| T |
44921685 |
aaaga-aaggaaaagga |
44921670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 126 - 200
Target Start/End: Original strand, 15539033 - 15539107
Alignment:
| Q |
126 |
gaacaaaaagttgaatactattaaaggatgcgagaagatttgaagaagaaagagaaggaaaaggaatttgtagag |
200 |
Q |
| |
|
||||||||||||||||||| | |||||||| |||||||||||||||||||| | |||||| | ||||||||||| |
|
|
| T |
15539033 |
gaacaaaaagttgaatactctaaaaggatgtgagaagatttgaagaagaaacacaaggaagacaaatttgtagag |
15539107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 44923989 - 44923929
Alignment:
| Q |
1 |
tgctattgtttgttgctctatgattgttgatatcattgcaagtgtttctatgctgctacct |
61 |
Q |
| |
|
||||||||| ||||||| | ||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
44923989 |
tgctattgtatgttgctatgtgattgttgatatcagtgcaagtttttctatgctgctacct |
44923929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1808 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: scaffold1808
Description:
Target: scaffold1808; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 1184 - 1008
Alignment:
| Q |
1 |
tgctattgtttgttgctctatgattgttgatatcattgcaagtgtttctatgctgctacctgtgactatcttgtagtttatatgtgaccactgcttaagc |
100 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||| || ||||||||||||||||||| ||||||| |
|
|
| T |
1184 |
tgctattttatgttgctctatgattgttgatatcattgcaagtttttctatgctgctacatgtgattatgttatagtttatatgtgaccactacttaagc |
1085 |
T |
|
| Q |
101 |
atgcattatattgtttattttggctgaacaaaaagttgaatactattaaaggatgcgagaagatttgaagaagaaaga |
178 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||| |||||| | |||||||| |||||||||||||||||||||| |
|
|
| T |
1084 |
atgcattatattg-ttattttggcagaacaaaaagtttaatactgtaaaaggatgtgagaagatttgaagaagaaaga |
1008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 3 - 188
Target Start/End: Original strand, 9 - 193
Alignment:
| Q |
3 |
ctattgtttgttgctctatgattgttgatatcattgcaagtgtttctatgctgctacctgtgactatcttgtagtttatatgtgaccactgcttaagcat |
102 |
Q |
| |
|
||||||| ||||||| | ||||||||||||||||||||||| |||||||| |||||||||||||||| || |||||||||||||||||| | ||||||| |
|
|
| T |
9 |
ctattgtatgttgctttgtgattgttgatatcattgcaagtttttctatgatgctacctgtgactatgttatagtttatatgtgaccaccacataagcat |
108 |
T |
|
| Q |
103 |
gcattatattgtttattttggctgaacaaaaagttgaatactattaaaggatgcgagaagatttgaagaagaaagagaaggaaaag |
188 |
Q |
| |
|
|||||||||||||| ||||| | ||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
109 |
gcattatattgtttgttttgccagaacaaaaagttgaatactataaaaggatgtgagaagatttgaagaagaaaga-aaggaaaag |
193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 118; Significance: 3e-60; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 3 - 188
Target Start/End: Original strand, 47065424 - 47065608
Alignment:
| Q |
3 |
ctattgtttgttgctctatgattgttgatatcattgcaagtgtttctatgctgctacctgtgactatcttgtagtttatatgtgaccactgcttaagcat |
102 |
Q |
| |
|
||||||| ||||||| | ||||||||||||||||||||||| |||||||| |||||||| ||||||| || |||||||||||||||||| | ||||||| |
|
|
| T |
47065424 |
ctattgtatgttgctttgtgattgttgatatcattgcaagtttttctatgttgctacctatgactatgttatagtttatatgtgaccaccacataagcat |
47065523 |
T |
|
| Q |
103 |
gcattatattgtttattttggctgaacaaaaagttgaatactattaaaggatgcgagaagatttgaagaagaaagagaaggaaaag |
188 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
47065524 |
gcattatattgtttgttttggcagaacaaaaagttgaatactataaaaggatgtgagaagatttgaagaagaaaga-aaggaaaag |
47065608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 3 - 188
Target Start/End: Complemental strand, 53301063 - 53300879
Alignment:
| Q |
3 |
ctattgtttgttgctctatgattgttgatatcattgcaagtgtttctatgctgctacctgtgactatcttgtagtttatatgtgaccactgcttaagcat |
102 |
Q |
| |
|
||||||| ||||||| | ||||||||||||||||||||||| |||||||| |||||||||||||||| || |||||||||||||||||| | ||||||| |
|
|
| T |
53301063 |
ctattgtatgttgctttgtgattgttgatatcattgcaagtttttctatgttgctacctgtgactatgttatagtttatatgtgaccaccacataagcat |
53300964 |
T |
|
| Q |
103 |
gcattatattgtttattttggctgaacaaaaagttgaatactattaaaggatgcgagaagatttgaagaagaaagagaaggaaaag |
188 |
Q |
| |
|
|| ||||||||||| ||||||| ||||||||||||||||||||| |||||| | |||||||||||||||||||||| ||||||||| |
|
|
| T |
53300963 |
gcgttatattgtttgttttggcagaacaaaaagttgaatactataaaaggacgtgagaagatttgaagaagaaaga-aaggaaaag |
53300879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 98 - 215
Target Start/End: Original strand, 1684368 - 1684482
Alignment:
| Q |
98 |
agcatgcattatattgtttattttggctgaacaaaaagttgaatactattaaaggatgcgagaagatttgaagaagaaagagaaggaaaaggaatttgta |
197 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
1684368 |
agcatgcattatattgtttattttggcaggacaaaaagttgaatactataaaaggatgc---aagatttgatgaagaaagagaaggaaaataaatttgta |
1684464 |
T |
|
| Q |
198 |
gagtgtcaacatcttgga |
215 |
Q |
| |
|
||||||||||| |||||| |
|
|
| T |
1684465 |
gagtgtcaacaacttgga |
1684482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 98 - 208
Target Start/End: Original strand, 8142825 - 8142933
Alignment:
| Q |
98 |
agcatgcattatattgtttattttggctgaacaaaaa-gttgaatactattaaaggatgcgagaagatttgaagaagaaagagaaggaaaaggaatttgt |
196 |
Q |
| |
|
||||||||||||||||||||||||||| | | ||||| ||||||||| | ||||||||| ||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
8142825 |
agcatgcattatattgtttattttggcaggataaaaaagttgaataccgtaaaaggatgc---aagatttgatgaagaaagagaaggaaaataaatttgt |
8142921 |
T |
|
| Q |
197 |
agagtgtcaaca |
208 |
Q |
| |
|
|||||||||||| |
|
|
| T |
8142922 |
agagtgtcaaca |
8142933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 25908618 - 25908665
Alignment:
| Q |
126 |
gaacaaaaagttgaatactattaaaggatgcgagaagatttgaagaag |
173 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
25908618 |
gaacaaaaagctgaatactataaaaggatgcgagaggatttgaagaag |
25908665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 39073434 - 39073495
Alignment:
| Q |
1 |
tgctattgtttgttgctctatgattgttgatatcattgcaagtgtttctatgctgctacctg |
62 |
Q |
| |
|
||||||||| ||||| | |||| |||||||||||| || |||| |||||||||| ||||||| |
|
|
| T |
39073434 |
tgctattgtatgttggtatatgcttgttgatatcagtgtaagtttttctatgctactacctg |
39073495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 112; Significance: 1e-56; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 58 - 217
Target Start/End: Complemental strand, 6684838 - 6684679
Alignment:
| Q |
58 |
acctgtgactatcttgtagtttatatgtgaccactgcttaagcatgcattatattgtttattttggctgaacaaaaagttgaatactattaaaggatgcg |
157 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||| | ||||||||| |
|
|
| T |
6684838 |
acctgtgactatcttatagtttatatgtgaccactgcttaagcatgcattatattgtctattttggcaggacaaaaagttgaatactgtaaaaggatgca |
6684739 |
T |
|
| Q |
158 |
agaagatttgaagaagaaagagaaggaaaaggaatttgtagagtgtcaacatcttggagc |
217 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
6684738 |
agaagatttgaagaagaaagacgaggaaaataaatttgtagagtgtcaacaacttggagc |
6684679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 58 - 217
Target Start/End: Complemental strand, 12592516 - 12592357
Alignment:
| Q |
58 |
acctgtgactatcttgtagtttatatgtgaccactgcttaagcatgcattatattgtttattttggctgaacaaaaagttgaatactattaaaggatgcg |
157 |
Q |
| |
|
||||||||||||||| ||| |||||||||||| |||||||||||||||| |||||||||||||||| | ||||||||||||||||| | |||||||||| |
|
|
| T |
12592516 |
acctgtgactatcttatagcttatatgtgacctttgcttaagcatgcattgtattgtttattttggcaggacaaaaagttgaatactgtaaaaggatgcg |
12592417 |
T |
|
| Q |
158 |
agaagatttgaagaagaaagagaaggaaaaggaatttgtagagtgtcaacatcttggagc |
217 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||||||| |||||| || ||||| |
|
|
| T |
12592416 |
agaagatttgaagaagaaagacaaggaaaataaatttgtagagcatcaacaactaggagc |
12592357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 98 - 215
Target Start/End: Original strand, 17719133 - 17719247
Alignment:
| Q |
98 |
agcatgcattatattgtttattttggctgaacaaaaagttgaatactattaaaggatgcgagaagatttgaagaagaaagagaaggaaaaggaatttgta |
197 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||||||||||||| | ||||||||| ||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
17719133 |
agcatgcattatattgtttattttggcaggacaaaaagttgaatactgtaaaaggatgc---aagatttgatgaagaaagagaaggaaaataaatttgta |
17719229 |
T |
|
| Q |
198 |
gagtgtcaacatcttgga |
215 |
Q |
| |
|
||||||||||| |||||| |
|
|
| T |
17719230 |
gagtgtcaacaacttgga |
17719247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 98 - 215
Target Start/End: Original strand, 14668754 - 14668867
Alignment:
| Q |
98 |
agcatgcattatattgtttattttggctgaacaaaaagttgaatactattaaaggatgcgagaagatttgaagaagaaagagaaggaaaaggaatttgta |
197 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||||||||| | | ||||||||| ||||||||| |||||||||||||||||| ||||| || |
|
|
| T |
14668754 |
agcatgcattatattgtttattttggtaggacaaaaagttgaatattgtaaaaggatgc---aagatttgatgaagaaagagaaggaaaataaattt-ta |
14668849 |
T |
|
| Q |
198 |
gagtgtcaacatcttgga |
215 |
Q |
| |
|
||||||||||| |||||| |
|
|
| T |
14668850 |
gagtgtcaacaacttgga |
14668867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 87 - 165
Target Start/End: Complemental strand, 30821792 - 30821714
Alignment:
| Q |
87 |
accactgcttaagcatgcattatattgtttattttggctgaacaaaaagttgaatactattaaaggatgcgagaagatt |
165 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| | |||||||||||||||| | |||||||||||||||||| |
|
|
| T |
30821792 |
accactgctgaagcatgcattatattgtttattttggcaggacaaaaagttgaataccgtaaaaggatgcgagaagatt |
30821714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 61 - 217
Target Start/End: Complemental strand, 51759435 - 51759279
Alignment:
| Q |
61 |
tgtgactatcttgtagtttatatgtgaccactgcttaagcatgcattatattgtttattttggctgaacaaaaagttgaatactattaaaggatgcgaga |
160 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||| ||||||||| ||||||||| ||||||||||| | | ||||||||||||||| | ||||||||||||| |
|
|
| T |
51759435 |
tgtgactatcttatagtttatatgtgacaactacttaagcatccattatattatttattttggcaggataaaaagttgaatactgtaaaaggatgcgaga |
51759336 |
T |
|
| Q |
161 |
agatttgaagaagaaagagaaggaaaaggaatttgtagagtgtcaacatcttggagc |
217 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
51759335 |
agatttgaagaagaaagacaaggaaaataaatttgtagagtgtcaacaacttggagc |
51759279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 58 - 217
Target Start/End: Original strand, 2942581 - 2942740
Alignment:
| Q |
58 |
acctgtgactatcttgtagtttatatgtgaccactgcttaagcatgcattatattgtttattttggctgaacaaaaagttgaatactattaaaggatgcg |
157 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||| | | |||||||||||| | | |||||||||| |
|
|
| T |
2942581 |
acctgtgactatcttataacttatatgtgaccactgcttaaacatgcattatattgtttattttggcaggataaaaagttgaattatgtaaaaggatgcg |
2942680 |
T |
|
| Q |
158 |
agaagatttgaagaagaaagagaaggaaaaggaatttgtagagtgtcaacatcttggagc |
217 |
Q |
| |
|
||| ||||||||||||||||| |||||||| ||||||||||| ||||||| |||||||| |
|
|
| T |
2942681 |
agaggatttgaagaagaaagacaaggaaaataaatttgtagagcgtcaacaacttggagc |
2942740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 7e-33; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 98 - 217
Target Start/End: Complemental strand, 17038238 - 17038119
Alignment:
| Q |
98 |
agcatgcattatattgtttattttggctgaacaaaaagttgaatactattaaaggatgcgagaagatttgaagaagaaagagaaggaaaaggaatttgta |
197 |
Q |
| |
|
||||||||||||||||||||||||||| | |||| ||||||||||| | ||||||| | ||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
17038238 |
agcatgcattatattgtttattttggcaggccaaatagttgaatactgtaaaaggattcaagaagatttgaagaagaaagacaaggaaaataaatttgta |
17038139 |
T |
|
| Q |
198 |
gagtgtcaacatcttggagc |
217 |
Q |
| |
|
||||||||||| |||||||| |
|
|
| T |
17038138 |
gagtgtcaacaacttggagc |
17038119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 98 - 215
Target Start/End: Original strand, 23615968 - 23616082
Alignment:
| Q |
98 |
agcatgcattatattgtttattttggctgaacaaaaagttgaatactattaaaggatgcgagaagatttgaagaagaaagagaaggaaaaggaatttgta |
197 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||||||||||| | | ||||||||| ||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
23615968 |
agcatgcattatattgtttattttggcaggacaaaaagttgaatattgtaaaaggatgc---aagatttgatgaagaaagagaaggaaaataaatttgta |
23616064 |
T |
|
| Q |
198 |
gagtgtcaacatcttgga |
215 |
Q |
| |
|
||||||||||| |||||| |
|
|
| T |
23616065 |
gagtgtcaacaacttgga |
23616082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 98 - 215
Target Start/End: Original strand, 23847364 - 23847478
Alignment:
| Q |
98 |
agcatgcattatattgtttattttggctgaacaaaaagttgaatactattaaaggatgcgagaagatttgaagaagaaagagaaggaaaaggaatttgta |
197 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||||||||||| | | ||||||||| ||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
23847364 |
agcatgcattatattgtttattttggcaggacaaaaagttgaatattgtaaaaggatgc---aagatttgatgaagaaagagaaggaaaataaatttgta |
23847460 |
T |
|
| Q |
198 |
gagtgtcaacatcttgga |
215 |
Q |
| |
|
||||||||||| |||||| |
|
|
| T |
23847461 |
gagtgtcaacaacttgga |
23847478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 173
Target Start/End: Complemental strand, 40422410 - 40422363
Alignment:
| Q |
126 |
gaacaaaaagttgaatactattaaaggatgcgagaagatttgaagaag |
173 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
40422410 |
gaacaaaaagctgaatactataaaaggatgcgagaggatttgaagaag |
40422363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0069 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0069
Description:
Target: scaffold0069; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 98 - 215
Target Start/End: Original strand, 40108 - 40222
Alignment:
| Q |
98 |
agcatgcattatattgtttattttggctgaacaaaaagttgaatactattaaaggatgcgagaagatttgaagaagaaagagaaggaaaaggaatttgta |
197 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||||||||||| | | ||||||||| ||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
40108 |
agcatgcattatattgtttattttggcaggacaaaaagttgaatattgtaaaaggatgc---aagatttgatgaagaaagagaaggaaaataaatttgta |
40204 |
T |
|
| Q |
198 |
gagtgtcaacatcttgga |
215 |
Q |
| |
|
||||||||||| |||||| |
|
|
| T |
40205 |
gagtgtcaacaacttgga |
40222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 98 - 215
Target Start/End: Complemental strand, 18767586 - 18767472
Alignment:
| Q |
98 |
agcatgcattatattgtttattttggctgaacaaaaagttgaatactattaaaggatgcgagaagatttgaagaagaaagagaaggaaaaggaatttgta |
197 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||||| |||||| | ||||||||| ||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
18767586 |
agcatgcattatattgtttattttggcaggacaaaaagttcaatactgtaaaaggatgc---aagatttgatgaagaaagagaaggaaaataaatttgta |
18767490 |
T |
|
| Q |
198 |
gagtgtcaacatcttgga |
215 |
Q |
| |
|
||||||||||| |||||| |
|
|
| T |
18767489 |
gagtgtcaacaacttgga |
18767472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 98 - 208
Target Start/End: Complemental strand, 19449137 - 19449030
Alignment:
| Q |
98 |
agcatgcattatattgtttattttggctgaacaaaaagttgaatactattaaaggatgcgagaagatttgaagaagaaagagaaggaaaaggaatttgta |
197 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||||||||||| | | ||||||||| ||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
19449137 |
agcatgcattatattgtttattttggcaggacaaaaagttgaatattgtaaaaggatgc---aagatttgatgaagaaagagaaggaaaataaatttgta |
19449041 |
T |
|
| Q |
198 |
gagtgtcaaca |
208 |
Q |
| |
|
||||||||||| |
|
|
| T |
19449040 |
gagtgtcaaca |
19449030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 98 - 208
Target Start/End: Original strand, 19531939 - 19532046
Alignment:
| Q |
98 |
agcatgcattatattgtttattttggctgaacaaaaagttgaatactattaaaggatgcgagaagatttgaagaagaaagagaaggaaaaggaatttgta |
197 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||||||||||| | | ||||||||| ||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
19531939 |
agcatgcattatattgtttattttggcaggacaaaaagttgaatattgtaaaaggatgc---aagatttgatgaagaaagagaaggaaaataaatttgta |
19532035 |
T |
|
| Q |
198 |
gagtgtcaaca |
208 |
Q |
| |
|
||||||||||| |
|
|
| T |
19532036 |
gagtgtcaaca |
19532046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 98 - 217
Target Start/End: Complemental strand, 27810551 - 27810432
Alignment:
| Q |
98 |
agcatgcattatattgtttattttggctgaacaaaaagttgaatactattaaaggatgcgagaagatttgaagaagaaagagaaggaaaaggaatttgta |
197 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||||||||||||| | |||||||| || |||||| |||||| ||||| |||||||| ||||||| |
|
|
| T |
27810551 |
agcatgcattatattgtttattttggcaggacaaaaagttgaatactgtaaaaggatgtgaaaagattagaagaaaaaagacaaggaaaatatatttgta |
27810452 |
T |
|
| Q |
198 |
gagtgtcaacatcttggagc |
217 |
Q |
| |
|
||| ||||||| |||||||| |
|
|
| T |
27810451 |
gagcgtcaacaacttggagc |
27810432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0684 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0684
Description:
Target: scaffold0684; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 215
Target Start/End: Original strand, 217 - 272
Alignment:
| Q |
160 |
aagatttgaagaagaaagagaaggaaaaggaatttgtagagtgtcaacatcttgga |
215 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
217 |
aagatttgataaagaaagagaaggaaaataaatttgtagagtgtcaacaacttgga |
272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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