View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10868_low_1 (Length: 472)
Name: NF10868_low_1
Description: NF10868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10868_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 116 - 312
Target Start/End: Original strand, 30656962 - 30657158
Alignment:
| Q |
116 |
ccaaaagagattgactcatttatttataaaccaaaccaattacatcacatagagaacataacacaataaaacataacataacatggaaaaagtgttgcga |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30656962 |
ccaaaagagattgactcatttatttataaaccaaaccaattacatcacatagagaacataacacaataaaacataacataacatggaaaaagtgttgcga |
30657061 |
T |
|
| Q |
216 |
ggaaatgaggtatttggtgaatcatgcaattggttcaagtctgttgtagcattaactttgtgttttggagcaattcatttcaatcttgctttgatac |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30657062 |
ggaaatgaggtatttggtgaatcatgcaattggttcaagtctgttgtagcattaactttgtgttttggagcaattcatttcaatcttgctttgatac |
30657158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 30656865 - 30656919
Alignment:
| Q |
19 |
acattacccacaaaaaggaaataggagagagtaatgtgacaaagcaaacatggta |
73 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30656865 |
acattacccacaaaaaggaaataggagagagtaatgtgacaaagcaaacatggta |
30656919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 426 - 467
Target Start/End: Original strand, 30657278 - 30657319
Alignment:
| Q |
426 |
gcatgtcaggctttttggtttcctcatgctgcctatgcttct |
467 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
30657278 |
gcatgtcaggctttttggtttcctcatgctgcttatgattct |
30657319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 255 - 312
Target Start/End: Complemental strand, 13200269 - 13200212
Alignment:
| Q |
255 |
tctgttgtagcattaactttgtgttttggagcaattcatttcaatcttgctttgatac |
312 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
13200269 |
tctgttgtagcattagctttgtgtttcggagcaattcatttcaatattgctttgatac |
13200212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University