View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10868_low_10 (Length: 335)
Name: NF10868_low_10
Description: NF10868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10868_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 15 - 319
Target Start/End: Complemental strand, 36725428 - 36725124
Alignment:
| Q |
15 |
gggcgagatggagaataggaagaggtgtgaatatcccgttgtttggcatgtcatggctaaatgagggaatgnnnnnnnacaactgatagtcttatttacg |
114 |
Q |
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| T |
36725428 |
gggcgagatggagaataggaagaggtgtgaatatcccgttgtttggcatgtcatggctaaatgatgggatgtttttctacaactgatagtcttatttacg |
36725329 |
T |
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| Q |
115 |
cgtctttagctcatatgaaggtaaaggatattcttgatcaatcctccaaggtatggaattctcctttaatttataatcttttttatcaaaacacggtcca |
214 |
Q |
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| T |
36725328 |
cgtctttagctcatgtgaaggtaaaggatattcttgatcaatcctccaaggtatggaattctcctttaatttataatcttttttatcaaaacacggtcca |
36725229 |
T |
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| Q |
215 |
gctgatcttgaatactcctttacaacctttggttgatgaggataagttgatttggaagactggaaaagaatggcaagtactcggtgcagagtgcctatag |
314 |
Q |
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| T |
36725228 |
gctgatcttgaatactcctttacaacctttggttgatgaggataagttgatttggaagactggaaaagaatggaaagtactcagtgcagtgtgcctatag |
36725129 |
T |
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| Q |
315 |
aatat |
319 |
Q |
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||||| |
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| T |
36725128 |
aatat |
36725124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 95 - 319
Target Start/End: Original strand, 8266464 - 8266691
Alignment:
| Q |
95 |
aactgatagtcttatttacgcgtctttagctcatatgaaggt-aaag--gatattcttgatcaatcctccaaggtatggaattctcctttaatttataat |
191 |
Q |
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| T |
8266464 |
aactgatagccctatttacgcatctttcgctcatgtgaaggtgaaagatgatatccttaaacaatcctccagggtatggaatgctcatttaatttacaat |
8266563 |
T |
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| Q |
192 |
ctttt-ttatcaaaacacggtccagctgatcttgaatactcctttacaacctttggttgatgaggataagttgatttggaagactggaaaagaatggcaa |
290 |
Q |
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| T |
8266564 |
ctttttttatcaaaatacttcccaactgattttgaatacacatttacaatctctggttaatgaagataagttgatttggaaggct-gaaaagaatggtaa |
8266662 |
T |
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| Q |
291 |
gtactcggtgcagagtgcctatagaatat |
319 |
Q |
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| T |
8266663 |
ctattcggtgtgtagtgcctatagaatat |
8266691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 176 - 286
Target Start/End: Original strand, 29713803 - 29713912
Alignment:
| Q |
176 |
tcctttaatttataatcttttttatcaaaacacggtccagctgatcttgaatactcctttacaacctttggttgatgaggataagttgatttggaagact |
275 |
Q |
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|||| |||||| |||| | ||| |||| ||||||| ||||| || |||||||||||||||||| ||||||||| || |||||||||||||||||| || |
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| T |
29713803 |
tcctctaatttctaatatgtttaatcataacacggctcagcttatattgaatactcctttacaaaatttggttgaggaagataagttgatttggaaggct |
29713902 |
T |
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| Q |
276 |
ggaaaagaatg |
286 |
Q |
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|||||||||| |
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| T |
29713903 |
-gaaaagaatg |
29713912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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