View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10868_low_11 (Length: 323)
Name: NF10868_low_11
Description: NF10868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10868_low_11 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 42 - 323
Target Start/End: Complemental strand, 53319092 - 53318811
Alignment:
| Q |
42 |
ttgaactcctgaaaaatcttgtatattagaacatagtttggatgattattgagtatgtgtatatttgttgaacacgtgaaaatggcactcattggaaaga |
141 |
Q |
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| T |
53319092 |
ttgaactcctgaaaaatcttgtatattagaacatagtttggatgattattgagtatgtgtatatttgttgaacacgtgaagatggcactcattggaaaga |
53318993 |
T |
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| Q |
142 |
acaaagtttggttttgtggatgaatctttcccaactctggtggaggatgaacctctttggcgtgttatttattctacgtcgattagtcattcgaaattca |
241 |
Q |
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| T |
53318992 |
acaaagtttggttttgtggatgaatctttcccaactctggtggaggatgaacctctttggcgtgttatttattctacgtcgattagtcattcgaaattca |
53318893 |
T |
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| Q |
242 |
ttgttgattcgttgaacattaacagatagcatatcttattttatccccaaccttgatgtaagcaatcacagataacaatagc |
323 |
Q |
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| T |
53318892 |
ttgttgattcgttgaacattaacagatagcatatcttattttatccccaaccttgatgtaagcaatcacagatgacaatagc |
53318811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 321
Target Start/End: Complemental strand, 53413336 - 53413302
Alignment:
| Q |
287 |
cccaaccttgatgtaagcaatcacagataacaata |
321 |
Q |
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| T |
53413336 |
cccacccttgatgtaagcaatcacagataacaata |
53413302 |
T |
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