View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10868_low_12 (Length: 322)

Name: NF10868_low_12
Description: NF10868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10868_low_12
NF10868_low_12
[»] chr2 (4 HSPs)
chr2 (19-313)||(30928481-30928775)
chr2 (19-167)||(30908697-30908845)
chr2 (18-181)||(30918780-30918943)
chr2 (90-118)||(40029482-40029510)
[»] chr5 (1 HSPs)
chr5 (18-118)||(14496629-14496729)
[»] chr8 (4 HSPs)
chr8 (19-78)||(29254335-29254394)
chr8 (136-167)||(29254461-29254492)
chr8 (137-165)||(29234684-29234712)
chr8 (39-111)||(29364704-29364776)
[»] chr3 (1 HSPs)
chr3 (25-117)||(34759842-34759934)


Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-141; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 19 - 313
Target Start/End: Complemental strand, 30928775 - 30928481
Alignment:
Q  19 tgtgactggagatcgatactatggagcaaaggctacaataaatttgtgggctccacatgtagaagatgaaaatgaattcagcttgtctcaaatatgggtc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30928775 tgtgactggagatcgatactatggagcaaaggctacaataaatttgtgggctccacatgtagaagatgaaaatgaattcagcttgtctcaaatatgggtc 30928676  T
Q  119 ctcgccaatggaaatgagaacaccattgaagctggttggcaggcatgttcataaataacatacnnnnnnnnnnatctattcattcccactttaattcatt 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||| |||||||||||||||    
T  30928675 ctcgccaatggaaatgagaacaccattgaagctggttggcaggcatgttcataaataacatacttttctttttatctattcatttccactttaattcatt 30928576  T
Q  219 tcctatatgcatggatattttatctatttaattagtatatactaatatctatatatgtcaataatcatgttatagtaatctcactttgccctttg 313  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  30928575 tcctatatgcatagatattttatctatttaattagtatatactaatatctatatacgtcaataatcatgttatagtaatctcactttgccctttg 30928481  T

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Target: chr2; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 19 - 167
Target Start/End: Complemental strand, 30908845 - 30908697
Alignment:
Q  19 tgtgactggagatcgatactatggagcaaaggctacaataaatttgtgggctccacatgtagaagatgaaaatgaattcagcttgtctcaaatatgggtc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||| |||||| |||||||||||||||||||||||| ||    
T  30908845 tgtgactggagatcgatactatggagcaaaggctacaataaatttgtggtccccacatgtggaaggtgaaaaagaattcagcttgtctcaaatatggctc 30908746  T
Q  119 ctcgccaatggaaatgagaacaccattgaagctggttggcaggcatgtt 167  Q
     || |   | ||||||  ||||||||||||||||||||||||| |||||    
T  30908745 gtcactggtagaaatgccaacaccattgaagctggttggcaggtatgtt 30908697  T

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Target: chr2; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 18 - 181
Target Start/End: Complemental strand, 30918943 - 30918780
Alignment:
Q  18 atgtgactggagatcgatactatggagcaaaggctacaataaatttgtgggctccacatgtagaagatgaaaatgaattcagcttgtctcaaatatgggt 117  Q
    ||||||| |||||||  ||||||||||||||||||||||||||||||||| | |||||||| |||| |||||| |||||||||||||||||||||||| |    
T  30918943 atgtgaccggagatctgtactatggagcaaaggctacaataaatttgtggtccccacatgtggaaggtgaaaaagaattcagcttgtctcaaatatggct 30918844  T
Q  118 cctcgccaatggaaatgagaacaccattgaagctggttggcaggcatgttcataaataacatac 181  Q
         ||  | |||||   ||||||||||||||||||||||||||||||| || ||| ||||||    
T  30918843 gacgaccggtagaaattccaacaccattgaagctggttggcaggcatgttaattaattacatac 30918780  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 118
Target Start/End: Original strand, 40029482 - 40029510
Alignment:
Q  90 atgaattcagcttgtctcaaatatgggtc 118  Q
    |||||||||||||||||||||||||||||    
T  40029482 atgaattcagcttgtctcaaatatgggtc 40029510  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 14496729 - 14496629
Alignment:
Q  18 atgtgactggagatcgatactatggagcaaaggctacaataaatttgtgggctccacatgtagaagatgaaaatgaattcagcttgtctcaaatatgggt 117  Q
    ||||||||||| ||| ||||||||||||||||||||  |||||  ||||||| |||| ||||| | |  || |||||||||||||||| ||||| |||||    
T  14496729 atgtgactggaaatcaatactatggagcaaaggctagcataaacgtgtgggccccacgtgtagcaaaccaatatgaattcagcttgtcccaaatgtgggt 14496630  T
Q  118 c 118  Q
    |    
T  14496629 c 14496629  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 29254335 - 29254394
Alignment:
Q  19 tgtgactggagatcgatactatggagcaaaggctacaataaatttgtgggctccacatgt 78  Q
    ||||||||||||| ||||| |||||||| ||||||| |||||| ||||||| || |||||    
T  29254335 tgtgactggagatagataccatggagcacaggctaccataaatgtgtgggccccccatgt 29254394  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 167
Target Start/End: Original strand, 29254461 - 29254492
Alignment:
Q  136 gaacaccattgaagctggttggcaggcatgtt 167  Q
    ||||||||||||||||||||||||||||||||    
T  29254461 gaacaccattgaagctggttggcaggcatgtt 29254492  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 165
Target Start/End: Original strand, 29234684 - 29234712
Alignment:
Q  137 aacaccattgaagctggttggcaggcatg 165  Q
    |||||||||||||||||||||||||||||    
T  29234684 aacaccattgaagctggttggcaggcatg 29234712  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 111
Target Start/End: Original strand, 29364704 - 29364776
Alignment:
Q  39 atggagcaaaggctacaataaatttgtgggctccacatgtagaagatgaaaatgaattcagcttgtctcaaat 111  Q
    ||||||||||||||||||||||  ||||||| || || || |||  |  |||||||||||||||| |||||||    
T  29364704 atggagcaaaggctacaataaacgtgtgggccccccaagtggaaagtccaaatgaattcagcttggctcaaat 29364776  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 117
Target Start/End: Complemental strand, 34759934 - 34759842
Alignment:
Q  25 tggagatcgatactatggagcaaaggctacaataaatttgtgggctccacatgtagaagatgaaaatgaattcagcttgtctcaaatatgggt 117  Q
    |||| ||| ||||| |||||||||||| |  |||||| ||||||| || ||||||  ||||| | ||||||| |||||||| || ||||||||    
T  34759934 tggaaatcaatactttggagcaaaggcaaacataaatgtgtgggcacctcatgtaacagatggatatgaatttagcttgtcacagatatgggt 34759842  T

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