View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10868_low_15 (Length: 282)

Name: NF10868_low_15
Description: NF10868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10868_low_15
NF10868_low_15
[»] chr4 (3 HSPs)
chr4 (1-264)||(13224650-13224913)
chr4 (22-256)||(13148881-13149115)
chr4 (6-208)||(13315460-13315662)


Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-138; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 13224913 - 13224650
Alignment:
Q  1 tatccaagtacttgagattagacaacattgttaattccactggtattgttcctgagtacgagttgtatccgatttccaagcgttgcaactctgataataa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  13224913 tatccaagtacttgagattagacaacattgttaattccactggtattgctcctgagtaggagttgtatccgatttccaagcgttgtaactctgataataa 13224814  T
Q  101 gcctagttgaggtggtagtgaaccttccaatgcattaccagccaaataaagaaatttgagtcttttgaaagttccataactttgagggattttgccactg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13224813 gcctagttgaggtggtagtgaaccttccaatgcattaccagccaaataaagaaatttgagtcttttgaaagttccataactttgagggattttgccactg 13224714  T
Q  201 aagtagcttccaccgaggttaaggtgttctagaaaaggtagcctgataaattcttcggggagag 264  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  13224713 aagtagcttccaccgaggttaaggtgttctaaaaaaggtagcctgataaattcttcggggagag 13224650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 22 - 256
Target Start/End: Original strand, 13148881 - 13149115
Alignment:
Q  22 acaacattgttaattccactggtattgttcctgagtacgagttgtatccgatttccaagcgttgcaactctgataataagcctagttgaggtggtagtga 121  Q
    |||||||||||| ||| ||||||| ||||||||| || | ||||||||| ||||| ||  |||| | |||||||||||||||||||| |||||||||||     
T  13148881 acaacattgttagttcaactggtagtgttcctgaatatgtgttgtatccaatttctaaatgttgtagctctgataataagcctagttcaggtggtagtgt 13148980  T
Q  122 accttccaatgcattaccagccaaataaagaaatttgagtcttttgaaagttccataactttgagggattttgccactgaagtagcttccaccgaggtta 221  Q
     |||||||||||||||||||| ||||  || || ||||||||||||||| ||||||| ||| | |||||| | ||| |||||||||||||||| ||| |     
T  13148981 gccttccaatgcattaccagctaaatctaggaacttgagtcttttgaaatttccatagcttggtgggattcttccattgaagtagcttccaccaaggctg 13149080  T
Q  222 aggtgttctagaaaaggtagcctgataaattcttc 256  Q
    || | ||||||||| || |||||||| | ||||||    
T  13149081 agcttttctagaaatggaagcctgattagttcttc 13149115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 6 - 208
Target Start/End: Original strand, 13315460 - 13315662
Alignment:
Q  6 aagtacttgagattagacaacattgttaattccactggtattgttcctgagtacgagttgtatccgatttccaagcgttgcaactctgataataagccta 105  Q
    ||||| ||||||||||||||||| |||||||||||||||| |||||||||  |   ||||||||| ||||||||  ||||||||||||||||||| ||||    
T  13315460 aagtatttgagattagacaacatcgttaattccactggtagtgttcctgaaaatttgttgtatccaatttccaaatgttgcaactctgataataacccta 13315559  T
Q  106 gttgaggtggtagtgaaccttccaatgcattaccagccaaataaagaaatttgagtcttttgaaagttccataactttgagggattttgccactgaagta 205  Q
    ||| ||||||||  ||||||||||||||||||||||| ||||| || || || |||||||  ||  |||||||||||   |||||| ||||| |||| ||    
T  13315560 gttcaggtggtacagaaccttccaatgcattaccagctaaatagaggaactttagtctttcaaagtttccataacttgctgggattgtgccattgaaata 13315659  T
Q  206 gct 208  Q
    |||    
T  13315660 gct 13315662  T

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