View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10868_low_16 (Length: 274)
Name: NF10868_low_16
Description: NF10868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10868_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 45283284 - 45283022
Alignment:
| Q |
1 |
cggttatctcttacagacaagcttgtatggaaggatttgacgatgcaaatgatggtgagaagaagatcaaggagcaattccatgttcagagtttggacag |
100 |
Q |
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| T |
45283284 |
cggttatctcttacagacaagcttgtatggaaggatttgacgatgcaaatgatggtgagaagaagatcaaggagcaattccatgttcagagtttggacag |
45283185 |
T |
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| Q |
101 |
cgtacaaaaggttaccgctgttgcccttgacattgtgactggtttgtccgacatcctccagcaattcaacttgaagtttgatgtcaaacctgcttcccgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45283184 |
cgtacaaaaggttaccgctgttgcccttgacattgtgactggtttgtccgacatcctccagcaattcaacttgaagtttgatgtcaaacctgcttcccgt |
45283085 |
T |
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| Q |
201 |
cgtcttcttaattctgaggtgactgttgacgatcaaggatacccttcatggatctctgcttct |
263 |
Q |
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| T |
45283084 |
cgtcttcttaattctgaggtgactgttgacgatcaaggatacccttcatggatctcttcttct |
45283022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 3 - 263
Target Start/End: Complemental strand, 45294670 - 45294410
Alignment:
| Q |
3 |
gttatctcttacagacaagcttgtatggaaggatttgacgatgcaaatgatggtgagaagaagatcaaggagcaattccatgttcagagtttggacagcg |
102 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
45294670 |
gttatctcttacagacaagcttgtatggaaggatttgacgatgaaaatgacggtgagaagaagatcaaggagcaattagacgttcagagtttggacagcg |
45294571 |
T |
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| Q |
103 |
tacaaaaggttaccgctgttgcccttgacattgtgactggtttgtccgacatcctccagcaattcaacttgaagtttgatgtcaaacctgcttcccgtcg |
202 |
Q |
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| T |
45294570 |
tacaaaaggttaccgctgttgcccttgacattgtgactggtttgtccgacatcctccagcaattcaacttgaagtttgatatcaaacctgcttcccgtcg |
45294471 |
T |
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| Q |
203 |
tcttcttaattctgaggtgactgttgacgatcaaggatacccttcatggatctctgcttct |
263 |
Q |
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| T |
45294470 |
tcttcttaattctgaggtgactgttgatgatcaaggatacccttcatggatctctgcttct |
45294410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 3 - 263
Target Start/End: Complemental strand, 45303630 - 45303370
Alignment:
| Q |
3 |
gttatctcttacagacaagcttgtatggaaggatttgacgatgcaaatgatggtgagaagaagatcaaggagcaattccatgttcagagtttggacagcg |
102 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
45303630 |
gttatctcttacagacaagcttgtatggaaggatttgacgatgaaaatgacggtgagaagaagatcaaggagcaattagacgttcagagtttggacagcg |
45303531 |
T |
|
| Q |
103 |
tacaaaaggttaccgctgttgcccttgacattgtgactggtttgtccgacatcctccagcaattcaacttgaagtttgatgtcaaacctgcttcccgtcg |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
45303530 |
tacaaaaggttaccgctgttgcccttgacattgtgactggtttgtccgacatcctccagcaattcaacttgaagtttgatatcaaacctgcttcccgtcg |
45303431 |
T |
|
| Q |
203 |
tcttcttaattctgaggtgactgttgacgatcaaggatacccttcatggatctctgcttct |
263 |
Q |
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| T |
45303430 |
tcttcttaattctgaggtgactgttgatgatcaaggatacccttcatggatctctgcttct |
45303370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 3 - 263
Target Start/End: Complemental strand, 45271508 - 45271248
Alignment:
| Q |
3 |
gttatctcttacagacaagcttgtatggaaggatttgacgatgcaaatgatggtgagaagaagatcaaggagcaattccatgttcagagtttggacagcg |
102 |
Q |
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||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
45271508 |
gttatctcttacaaacaaggttgtatggaaggatttgacgatgcaaatgatggtgagaagaagatcaaggagcaattccatgttcagagtttgtacagcg |
45271409 |
T |
|
| Q |
103 |
tacaaaaggttaccgctgttgcccttgacattgtgactggtttgtccgacatcctccagcaattcaacttgaagtttgatgtcaaacctgcttcccgtcg |
202 |
Q |
| |
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|||||||||| || || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||| |||||||||| |
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| T |
45271408 |
tacaaaaggtcacagccgttgcccttgacattgtgactggtttgtctgacatcctccagcaattcaacttgaactttgatatcaaacctccttcccgtcg |
45271309 |
T |
|
| Q |
203 |
tcttcttaattctgaggtgactgttgacgatcaaggatacccttcatggatctctgcttct |
263 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
45271308 |
tcttcttaattctgaggtgactgttgacgatcaaggatacccttcatggatctcttcttct |
45271248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 12 - 263
Target Start/End: Complemental strand, 45275032 - 45274781
Alignment:
| Q |
12 |
tacagacaagcttgtatggaaggatttgacgatgcaaatgatggtgagaagaagatcaaggagcaattccatgttcagagtttggacagcgtacaaaagg |
111 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
45275032 |
tacagacaagcctgtatggaaggatttgacgatgcaaatgatggtgagaagaaaatcaaagagcaattccatgttcagagtttggacagcgtacaaaaga |
45274933 |
T |
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| Q |
112 |
ttaccgctgttgcccttgacattgtgactggtttgtccgacatcctccagcaattcaacttgaagtttgatgtcaaacctgcttcccgtcgtcttcttaa |
211 |
Q |
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| T |
45274932 |
tcaccgcggttgcccttgacattgtgactggtttgtccgacatcctccagcaattcaacttgaagtttgatatcaaacctctttcccgtcgtcttcttaa |
45274833 |
T |
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| Q |
212 |
ttctgaggtgactgttgacgatcaaggatacccttcatggatctctgcttct |
263 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45274832 |
ttctgaggtgactgttgacgatcaaggatacccttcatggatctctgcttct |
45274781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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