View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10868_low_17 (Length: 270)

Name: NF10868_low_17
Description: NF10868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10868_low_17
NF10868_low_17
[»] chr2 (6 HSPs)
chr2 (37-94)||(35653214-35653271)
chr2 (213-258)||(35653390-35653435)
chr2 (38-78)||(35676866-35676906)
chr2 (38-78)||(35682901-35682941)
chr2 (213-258)||(35099149-35099194)
chr2 (38-74)||(35668017-35668053)


Alignment Details
Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 37 - 94
Target Start/End: Original strand, 35653214 - 35653271
Alignment:
Q  37 gggtgccctatgaggtattccctttcttcttgaatttggcttttggataggaagcatg 94  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35653214 gggtgccctatgaggtattccctttcttcttgaatttggcttttggataggaagcatg 35653271  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 213 - 258
Target Start/End: Original strand, 35653390 - 35653435
Alignment:
Q  213 gtgccttgatcgattcctccaacaatctttccatttcttctctctc 258  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||    
T  35653390 gtgccttgatcgattcctccaacaatctttccatttcttctgtctc 35653435  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 78
Target Start/End: Original strand, 35676866 - 35676906
Alignment:
Q  38 ggtgccctatgaggtattccctttcttcttgaatttggctt 78  Q
    ||||||||||||| ||||||||||||| |||||||||||||    
T  35676866 ggtgccctatgagctattccctttctttttgaatttggctt 35676906  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 78
Target Start/End: Original strand, 35682901 - 35682941
Alignment:
Q  38 ggtgccctatgaggtattccctttcttcttgaatttggctt 78  Q
    ||||||||||||| ||||||||||||| |||||||||||||    
T  35682901 ggtgccctatgagctattccctttctttttgaatttggctt 35682941  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 213 - 258
Target Start/End: Complemental strand, 35099194 - 35099149
Alignment:
Q  213 gtgccttgatcgattcctccaacaatctttccatttcttctctctc 258  Q
    |||||||||||||||| ||||  |||||||||||||||||| ||||    
T  35099194 gtgccttgatcgattcttccagtaatctttccatttcttctgtctc 35099149  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 74
Target Start/End: Original strand, 35668017 - 35668053
Alignment:
Q  38 ggtgccctatgaggtattccctttcttcttgaatttg 74  Q
    |||||||  ||||||||||||||||||||||||||||    
T  35668017 ggtgcccgttgaggtattccctttcttcttgaatttg 35668053  T

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