View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10868_low_19 (Length: 254)

Name: NF10868_low_19
Description: NF10868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10868_low_19
NF10868_low_19
[»] chr6 (10 HSPs)
chr6 (76-176)||(14766215-14766314)
chr6 (81-172)||(21118239-21118329)
chr6 (81-172)||(14763663-14763753)
chr6 (4-72)||(21118746-21118814)
chr6 (85-174)||(32342305-32342391)
chr6 (81-174)||(20727667-20727755)
chr6 (4-72)||(21118464-21118532)
chr6 (4-72)||(32342102-32342170)
chr6 (10-64)||(14763871-14763925)
chr6 (4-64)||(14766448-14766508)
[»] chr5 (8 HSPs)
chr5 (76-176)||(41341251-41341348)
chr5 (76-174)||(7400279-7400375)
chr5 (76-138)||(35429752-35429814)
chr5 (9-72)||(7400502-7400565)
chr5 (9-72)||(35429940-35430003)
chr5 (9-72)||(41341062-41341125)
chr5 (19-72)||(35428357-35428410)
chr5 (102-147)||(7659199-7659244)
[»] chr7 (13 HSPs)
chr7 (83-175)||(5447675-5447768)
chr7 (76-176)||(5439661-5439760)
chr7 (76-176)||(5448671-5448770)
chr7 (1-66)||(5448902-5448967)
chr7 (1-66)||(5439892-5439957)
chr7 (125-175)||(5438699-5438749)
chr7 (9-66)||(5438899-5438956)
chr7 (76-171)||(15589602-15589694)
chr7 (104-174)||(15588511-15588578)
chr7 (9-66)||(5447909-5447966)
chr7 (23-66)||(15588695-15588738)
chr7 (104-141)||(1813543-1813580)
chr7 (95-127)||(18673778-18673810)
[»] chr1 (10 HSPs)
chr1 (76-176)||(6138408-6138505)
chr1 (85-174)||(52022349-52022435)
chr1 (76-172)||(3742461-3742556)
chr1 (9-72)||(6138219-6138282)
chr1 (4-72)||(52022143-52022211)
chr1 (4-66)||(6139835-6139897)
chr1 (76-157)||(5397541-5397619)
chr1 (84-126)||(6140037-6140079)
chr1 (4-65)||(43834974-43835035)
chr1 (85-125)||(17645483-17645523)
[»] chr3 (13 HSPs)
chr3 (81-176)||(3371630-3371722)
chr3 (76-174)||(17730878-17730974)
chr3 (76-174)||(19032109-19032205)
chr3 (76-174)||(43979431-43979526)
chr3 (76-172)||(1027011-1027105)
chr3 (83-157)||(38182994-38183068)
chr3 (4-72)||(38183140-38183208)
chr3 (81-134)||(40195750-40195803)
chr3 (4-72)||(17731101-17731169)
chr3 (4-72)||(19032332-19032400)
chr3 (96-167)||(21344517-21344585)
chr3 (23-71)||(1026835-1026883)
chr3 (9-61)||(21344727-21344779)
[»] chr4 (7 HSPs)
chr4 (83-174)||(14508946-14509036)
chr4 (84-137)||(4528729-4528782)
chr4 (85-176)||(31322837-31322929)
chr4 (104-174)||(45676540-45676607)
chr4 (9-72)||(10550051-10550114)
chr4 (4-72)||(14508745-14508813)
chr4 (116-176)||(8445696-8445753)
[»] chr2 (8 HSPs)
chr2 (83-167)||(20594841-20594922)
chr2 (1-72)||(4660143-4660213)
chr2 (83-141)||(33300962-33301020)
chr2 (81-118)||(7371844-7371881)
chr2 (85-126)||(38472142-38472183)
chr2 (80-123)||(10751298-10751342)
chr2 (76-124)||(33300900-33300948)
chr2 (114-176)||(33302436-33302495)
[»] chr8 (3 HSPs)
chr8 (84-176)||(7284415-7284504)
chr8 (9-72)||(7278087-7278150)
chr8 (4-72)||(392343-392411)


Alignment Details
Target: chr6 (Bit Score: 71; Significance: 3e-32; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 76 - 176
Target Start/End: Complemental strand, 14766314 - 14766215
Alignment:
Q  76 ggtcctggttttttctccggttttggagtttccacgttatattcttgtg-ttgtgattgtgtttattatttttcttcttcagccctattatttcctaaca 174  Q
    |||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||  |||||||||||||||||| |||||||||||||    
T  14766314 ggtcgtggttttttctccgattttggagtttccacgttatattcttgtgtttgtgattgtgtttat--tttttcttcttcagccctgttatttcctaaca 14766217  T

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Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 81 - 172
Target Start/End: Complemental strand, 21118329 - 21118239
Alignment:
Q  81 tggttttttctccggttttggagtttccacgttatattcttgtgttgtgattgtgtttattatttttcttcttcagccctattatttcctaa 172  Q
    ||||||||||| || |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| | ||| |||||||    
T  21118329 tggttttttcttcgattttggagtttccacgttatattcttgtgtagtgattgtgttt-ttatttttcttcttcagccttgttaattcctaa 21118239  T

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Target: chr6; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 81 - 172
Target Start/End: Complemental strand, 14763753 - 14763663
Alignment:
Q  81 tggttttttctccggttttggagtttccacgttatattcttgtg-ttgtgattgtgtttattatttttcttcttcagccctattatttcctaa 172  Q
    ||||||||||| ||||||||||||||||| |||||||| ||||| ||||||||||||||||  |||||||| ||||||||| |||||||||||    
T  14763753 tggttttttcttcggttttggagtttccatgttatatttttgtgtttgtgattgtgtttat--tttttctttttcagccctgttatttcctaa 14763663  T

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Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 21118814 - 21118746
Alignment:
Q  4 gctacatattgaacctaatttctttgtttttagatgcacccgtcagtagtactttaagcttatctctga 72  Q
    |||| |||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||| |||||    
T  21118814 gctatatattgaacctagtttctttgtttttagatgcaccagtcagtagcactttaagcttatatctga 21118746  T

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Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 85 - 174
Target Start/End: Original strand, 32342305 - 32342391
Alignment:
Q  85 tttttctccggttttggagtttccacgttatattcttgtgttgtgattgtgtttattatttttcttcttcagccctattatttcctaaca 174  Q
    |||||||||  |||||||||||||||||||||||||||||| |||||| |||   ||||||||||||||||||  | |||||||||||||    
T  32342305 tttttctccaattttggagtttccacgttatattcttgtgtagtgattatgt---ttatttttcttcttcagctatgttatttcctaaca 32342391  T

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Target: chr6; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 81 - 174
Target Start/End: Original strand, 20727667 - 20727755
Alignment:
Q  81 tggttttttctccggttttggagtttccacgttatattcttgtgttgtgattgtgtttattatttttcttcttcagccctattatttcctaaca 174  Q
    |||||||||||| | |||| |||||||||| |||||||||||||||||||||||     |||||||| ||||||||| || |||||||||||||    
T  20727667 tggttttttctctgattttagagtttccacattatattcttgtgttgtgattgt-----ttattttttttcttcagctctgttatttcctaaca 20727755  T

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Target: chr6; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 21118532 - 21118464
Alignment:
Q  4 gctacatattgaacctaatttctttgtttttagatgcacccgtcagtagtactttaagcttatctctga 72  Q
    |||| |||||||||||| |||||||||||||||||||||| |||| ||| ||||||||||||| |||||    
T  21118532 gctatatattgaacctagtttctttgtttttagatgcaccagtcaatagcactttaagcttatatctga 21118464  T

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Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 32342102 - 32342170
Alignment:
Q  4 gctacatattgaacctaatttctttgtttttagatgcacccgtcagtagtactttaagcttatctctga 72  Q
    |||| ||||||||  ||| ||||||||||||||||||||| |||||||  ||||||||||||| |||||    
T  32342102 gctatatattgaatataagttctttgtttttagatgcaccggtcagtaacactttaagcttatatctga 32342170  T

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Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 10 - 64
Target Start/End: Complemental strand, 14763925 - 14763871
Alignment:
Q  10 tattgaacctaatttctttgtttttagatgcacccgtcagtagtactttaagctt 64  Q
    ||||||| ||| |||||||||||||||||| ||| |||||||| |||||||||||    
T  14763925 tattgaatctagtttctttgtttttagatgtaccagtcagtagcactttaagctt 14763871  T

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Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 64
Target Start/End: Complemental strand, 14766508 - 14766448
Alignment:
Q  4 gctacatattgaacctaatttctttgtttttagatgcacccgtcagtagtactttaagctt 64  Q
    |||| |||||||||||| ||| |||||||||||||||||  |||| ||| |||||||||||    
T  14766508 gctatatattgaacctagtttttttgtttttagatgcactagtcaatagcactttaagctt 14766448  T

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Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 76 - 176
Target Start/End: Original strand, 41341251 - 41341348
Alignment:
Q  76 ggtcctggttttttctccggttttggagtttccacgttatattcttgtgttgtgattgtgtttattatttttcttcttcagccctattatttcctaacag 175  Q
    |||| |||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||    
T  41341251 ggtcatggtttttcctctggttttggagtttccatgttatattcttgtgttgtgattgtgt---ttatttttcttcttcagccctattatttcctaacag 41341347  T

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Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 76 - 174
Target Start/End: Complemental strand, 7400375 - 7400279
Alignment:
Q  76 ggtcctggttttttctccggttttggagtttccacgttatattcttgtgttgtgattgtgtttattatttttcttcttcagccctattatttcctaaca 174  Q
    |||| ||||||||||||| ||||| |||||||||| |||||||||| |||||||||||| |||||  |||||||||||| ||||| |||||||||||||    
T  7400375 ggtcatggttttttctcccgttttagagtttccacattatattcttatgttgtgattgtatttat--tttttcttcttcggcccttttatttcctaaca 7400279  T

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Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 76 - 138
Target Start/End: Complemental strand, 35429814 - 35429752
Alignment:
Q  76 ggtcctggttttttctccggttttggagtttccacgttatattcttgtgttgtgattgtgttt 138  Q
    |||| |||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||    
T  35429814 ggtcgtggtttttcctctagttttggagtttccacgttatattcttgtgttgtgattgtgttt 35429752  T

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Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 7400565 - 7400502
Alignment:
Q  9 atattgaacctaatttctttgtttttagatgcacccgtcagtagtactttaagcttatctctga 72  Q
    ||||||||||||  ||||||||||||||||||||| |||||||| ||||||||||||| |||||    
T  7400565 atattgaacctaggttctttgtttttagatgcaccggtcagtagcactttaagcttatatctga 7400502  T

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Target: chr5; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 35430003 - 35429940
Alignment:
Q  9 atattgaacctaatttctttgtttttagatgcacccgtcagtagtactttaagcttatctctga 72  Q
    |||||||||||| |||||||||||||||| ||||| |||||||| ||||||||||||| |||||    
T  35430003 atattgaacctagtttctttgtttttagaagcaccagtcagtagcactttaagcttatatctga 35429940  T

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Target: chr5; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 41341062 - 41341125
Alignment:
Q  9 atattgaacctaatttctttgtttttagatgcacccgtcagtagtactttaagcttatctctga 72  Q
    ||||| |||||| |||||||||||||||||||||| |||||||| ||||||||||||| |||||    
T  41341062 atattaaacctagtttctttgtttttagatgcaccagtcagtagcactttaagcttatatctga 41341125  T

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Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 35428410 - 35428357
Alignment:
Q  19 taatttctttgtttttagatgcacccgtcagtagtactttaagcttatctctga 72  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||||| |||||    
T  35428410 taatttctttgtttttagatgcaccagtcagtagcactttaagcttatatctga 35428357  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 102 - 147
Target Start/End: Original strand, 7659199 - 7659244
Alignment:
Q  102 agtttccacgttatattcttgtgttgtgattgtgtttattattttt 147  Q
    ||||||||| ||||||||||||||||||||| || ||||| |||||    
T  7659199 agtttccacattatattcttgtgttgtgattatgcttatttttttt 7659244  T

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Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 83 - 175
Target Start/End: Complemental strand, 5447768 - 5447675
Alignment:
Q  83 gttttttctccggttttggagtttccacgttatattcttgtgtt-gtgattgtgtttattatttttcttcttcagccctattatttcctaacag 175  Q
    ||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  5447768 gttttttctccggttttagagtttccacattatattcttgtgtttgtgattgtgtttattttttttcttcttcagccctgttatttcctaacag 5447675  T

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Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 76 - 176
Target Start/End: Complemental strand, 5439760 - 5439661
Alignment:
Q  76 ggtcctggttttttctccggttttggagtttccacgttatattcttgt-gttgtgattgtgtttattatttttcttcttcagccctattatttcctaaca 174  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||  ||||||||||||||||  ||||||||||||| |||| |||||||||||||    
T  5439760 ggtcatggttttttctacggttttggagtttccacgttatattcttgtatttgtgattgtgtttat--tttttcttcttcaaccctgttatttcctaaca 5439663  T

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Target: chr7; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 76 - 176
Target Start/End: Complemental strand, 5448770 - 5448671
Alignment:
Q  76 ggtcctggttttttctccggttttggagtttccacgttatattcttgt-gttgtgattgtgtttattatttttcttcttcagccctattatttcctaaca 174  Q
    |||| ||||||||||| |||||||||||||||||| ||||||||||||  ||||||||||||||||  ||||||||||||| |||| |||||||||||||    
T  5448770 ggtcatggttttttctacggttttggagtttccacattatattcttgtatttgtgattgtgtttat--tttttcttcttcaaccctgttatttcctaaca 5448673  T

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Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 5448967 - 5448902
Alignment:
Q  1 aatgctacatattgaacctaatttctttgtttttagatgcacccgtcagtagtactttaagcttat 66  Q
    ||||||| |||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||    
T  5448967 aatgctatatattgaacctagtttctttgtttttagatgcaccagtcagtagcactttaagcttat 5448902  T

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Target: chr7; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 5439957 - 5439892
Alignment:
Q  1 aatgctacatattgaacctaatttctttgtttttagatgcacccgtcagtagtactttaagcttat 66  Q
    ||||||| |||||||||||| ||| |||||||||||||||||| |||||||| |||||||||||||    
T  5439957 aatgctatatattgaacctagtttatttgtttttagatgcaccagtcagtagcactttaagcttat 5439892  T

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Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 125 - 175
Target Start/End: Complemental strand, 5438749 - 5438699
Alignment:
Q  125 ttgtgattgtgtttattatttttcttcttcagccctattatttcctaacag 175  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  5438749 ttgtgattgtgtttattttttttcttcttcagccctgttatttcctaacag 5438699  T

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Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 5438956 - 5438899
Alignment:
Q  9 atattgaacctaatttctttgtttttagatgcacccgtcagtagtactttaagcttat 66  Q
    ||||||||| || |||||||||||||||||||||| |||| ||| |||||||||||||    
T  5438956 atattgaacatagtttctttgtttttagatgcaccagtcaatagcactttaagcttat 5438899  T

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Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 76 - 171
Target Start/End: Complemental strand, 15589694 - 15589602
Alignment:
Q  76 ggtcctggttttttctccggttttggagtttccacgttatattcttgtgttgtgattgtgtttattatttttcttcttcagccctattatttccta 171  Q
    |||| ||| ||||||| ||||||||||||||||| ||||||||||||||   ||||||||    |||||||||||||| |||| | ||||||||||    
T  15589694 ggtcatgggtttttcttcggttttggagtttccaagttatattcttgtgcaatgattgtg---cttatttttcttctttagccatgttatttccta 15589602  T

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Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 104 - 174
Target Start/End: Complemental strand, 15588578 - 15588511
Alignment:
Q  104 tttccacgttatattcttgtgttgtgattgtgtttattatttttcttcttcagccctattatttcctaaca 174  Q
    ||||||||||||||||||||||||||||||||    ||||||||||  || |||||| |||||||||||||    
T  15588578 tttccacgttatattcttgtgttgtgattgtg---cttatttttctattttagccctcttatttcctaaca 15588511  T

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Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 5447966 - 5447909
Alignment:
Q  9 atattgaacctaatttctttgtttttagatgcacccgtcagtagtactttaagcttat 66  Q
    ||||||||| || |||||||||| ||||||||||| |||| ||| |||||||||||||    
T  5447966 atattgaacatagtttctttgttcttagatgcaccagtcaatagcactttaagcttat 5447909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 66
Target Start/End: Complemental strand, 15588738 - 15588695
Alignment:
Q  23 ttctttgtttttagatgcacccgtcagtagtactttaagcttat 66  Q
    ||||||||||||||||||||| |||||||| || ||||||||||    
T  15588738 ttctttgtttttagatgcacctgtcagtagcacgttaagcttat 15588695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 104 - 141
Target Start/End: Complemental strand, 1813580 - 1813543
Alignment:
Q  104 tttccacgttatattcttgtgttgtgattgtgtttatt 141  Q
    ||||||| ||||||| ||||||||||||||||||||||    
T  1813580 tttccacattatatttttgtgttgtgattgtgtttatt 1813543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Complemental strand, 18673810 - 18673778
Alignment:
Q  95 gttttggagtttccacgttatattcttgtgttg 127  Q
    ||||||||||||||||||||| |||||||||||    
T  18673810 gttttggagtttccacgttatgttcttgtgttg 18673778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 76 - 176
Target Start/End: Original strand, 6138408 - 6138505
Alignment:
Q  76 ggtcctggttttttctccggttttggagtttccacgttatattcttgtgttgtgattgtgtttattatttttcttcttcagccctattatttcctaacag 175  Q
    |||| ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||| ||||||||||||||    
T  6138408 ggtcgtggttttttctctagttttggagtttccacgttatattcttgtgttgtgattgtgt---atatttttcttcttcagccctgttatttcctaacag 6138504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 85 - 174
Target Start/End: Original strand, 52022349 - 52022435
Alignment:
Q  85 tttttctccggttttggagtttccacgttatattcttgtgttgtgattgtgtttattatttttcttcttcagccctattatttcctaaca 174  Q
    ||||||| ||||||||||||||||||||||||| |||||||||||||||||    |||||||||||||||| ||||||||||||||||||    
T  52022349 tttttcttcggttttggagtttccacgttatatccttgtgttgtgattgtg---cttatttttcttcttcaaccctattatttcctaaca 52022435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 76 - 172
Target Start/End: Complemental strand, 3742556 - 3742461
Alignment:
Q  76 ggtcctggttttttctccggttttggagtttccacgttatattcttgtg-ttgtgattgtgtttattatttttcttcttcagccctattatttcctaa 172  Q
    |||| |||||||||||| | |||| |||||| ||||||||||||||||| ||||||||||||||||  |||| ||||||||||||| |||||||||||    
T  3742556 ggtcgtggttttttctctgatttttgagttttcacgttatattcttgtgtttgtgattgtgtttat--ttttccttcttcagccctgttatttcctaa 3742461  T

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Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 6138219 - 6138282
Alignment:
Q  9 atattgaacctaatttctttgtttttagatgcacccgtcagtagtactttaagcttatctctga 72  Q
    |||||||||||| ||||||||||||| |||||||| |||||||| ||||||||||||| |||||    
T  6138219 atattgaacctagtttctttgttttttgatgcaccagtcagtagcactttaagcttatatctga 6138282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 52022143 - 52022211
Alignment:
Q  4 gctacatattgaacctaatttctttgtttttagatgcacccgtcagtagtactttaagcttatctctga 72  Q
    |||| |||||||||||| |||||||||||||||||||||| |||| ||| |||||||||| || |||||    
T  52022143 gctatatattgaacctagtttctttgtttttagatgcaccagtcattagcactttaagctcatatctga 52022211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 6139835 - 6139897
Alignment:
Q  4 gctacatattgaacctaatttctttgtttttagatgcacccgtcagtagtactttaagcttat 66  Q
    |||| ||||||||| || |||||||||||||||||||||| |||| ||  |||||||||||||    
T  6139835 gctatatattgaacatagtttctttgtttttagatgcaccggtcaataacactttaagcttat 6139897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 157
Target Start/End: Original strand, 5397541 - 5397619
Alignment:
Q  76 ggtcctggttttttctccggttttggagtttccacgttatattcttgtgttgtgattgtgtttattatttttcttcttcagc 157  Q
    |||| ||||||||||| | |||||||||||   || ||||||||||||||||||||| || ||||   ||||||||||||||    
T  5397541 ggtcgtggttttttcttcagttttggagttcttactttatattcttgtgttgtgattttgcttat---ttttcttcttcagc 5397619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 126
Target Start/End: Original strand, 6140037 - 6140079
Alignment:
Q  84 ttttttctccggttttggagtttccacgttatattcttgtgtt 126  Q
    ||||||||| | ||||||||||| |||||||||||||||||||    
T  6140037 ttttttctctgattttggagttttcacgttatattcttgtgtt 6140079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 43834974 - 43835035
Alignment:
Q  4 gctacatattgaacctaatttctttgtttttagatgcacccgtcagtagtactttaagctta 65  Q
    |||| ||||||||||||| ||||| ||||| ||||||| | |||||||| ||||||| ||||    
T  43834974 gctatatattgaacctaagttcttagttttaagatgcatcagtcagtagcactttaaactta 43835035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 125
Target Start/End: Complemental strand, 17645523 - 17645483
Alignment:
Q  85 tttttctccggttttggagtttccacgttatattcttgtgt 125  Q
    ||||||||||||||| |||||||| | ||||||||||||||    
T  17645523 tttttctccggttttagagtttccgcattatattcttgtgt 17645483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 81 - 176
Target Start/End: Original strand, 3371630 - 3371722
Alignment:
Q  81 tggttttttctccggttttggagtttccacgttatattcttgtgttgtgattgtgtttattatttttcttcttcagccctattatttcctaacagt 176  Q
    |||||||||||||||||||||||||||| |||||||||||||||| ||||||| |   |||||||||||||||||||||||||||||| |||||||    
T  3371630 tggttttttctccggttttggagtttcctcgttatattcttgtgtagtgattgcg---attatttttcttcttcagccctattatttcataacagt 3371722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 76 - 174
Target Start/End: Complemental strand, 17730974 - 17730878
Alignment:
Q  76 ggtcctggttttttc-tccggttttggagtttccacgttatattcttgtgttgtgattgtgtttattatttttcttcttcagccctattatttcctaaca 174  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||   |||||| |||||||| |||| |||||||||||||    
T  17730974 ggtcgtggttttttcctccggttttggagtttccacgttatattcttgtgttgtgattgtgtt---tattttgcttcttcaaccctgttatttcctaaca 17730878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 76 - 174
Target Start/End: Complemental strand, 19032205 - 19032109
Alignment:
Q  76 ggtcctggttttttc-tccggttttggagtttccacgttatattcttgtgttgtgattgtgtttattatttttcttcttcagccctattatttcctaaca 174  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||   |||||| |||||||| |||| |||||||||||||    
T  19032205 ggtcgtggttttttcctccggttttggagtttccacgttatattcttgtgttgtgattgtgtt---tattttgcttcttcaaccctgttatttcctaaca 19032109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 76 - 174
Target Start/End: Original strand, 43979431 - 43979526
Alignment:
Q  76 ggtcctggttttttctccggttttggagtttccacgttatattcttgtgttgtgattgtgtttattatttttcttcttcagccctattatttcctaaca 174  Q
    |||| ||||||||||||| ||||||||||||||||||||||||||||||| || |||||||   ||||||||||||||||||| | |||||||||||||    
T  43979431 ggtcgtggttttttctccagttttggagtttccacgttatattcttgtgtagttattgtgt---ttatttttcttcttcagccatgttatttcctaaca 43979526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 76 - 172
Target Start/End: Original strand, 1027011 - 1027105
Alignment:
Q  76 ggtcctggttttttctccggttttggagtttccacgttatattcttgtgttgtgattgtgtttattatttttcttcttcagccctattatttcctaa 172  Q
    |||| |||||||||||| ||||||||||||| |||||||||||| ||| | ||||||||||||||  ||||||||||||| |||| |||||||||||    
T  1027011 ggtcgtggttttttctctggttttggagtttacacgttatattcctgtatagtgattgtgtttat--tttttcttcttcaaccctgttatttcctaa 1027105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 83 - 157
Target Start/End: Complemental strand, 38183068 - 38182994
Alignment:
Q  83 gttttttctccggttttggagtttccacgttatattcttgtg-ttgtgattgtgtttattatttttcttcttcagc 157  Q
    ||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  38183068 gttttgtcttcggttttggagtttccacgttatattcttgtgtttgtgattgtgtttatt-tttttcttcttcagc 38182994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 38183208 - 38183140
Alignment:
Q  4 gctacatattgaacctaatttctttgtttttagatgcacccgtcagtagtactttaagcttatctctga 72  Q
    |||| |||||||| ||| |||||||||||||||||||||| |||||||| ||||||||||||| |||||    
T  38183208 gctatatattgaatctagtttctttgtttttagatgcaccagtcagtagcactttaagcttatatctga 38183140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 81 - 134
Target Start/End: Original strand, 40195750 - 40195803
Alignment:
Q  81 tggttttttctccggttttggagtttccacgttatattcttgtgttgtgattgt 134  Q
    |||||||||||| ||||||||| |||||||||||||||||||| ||||||||||    
T  40195750 tggttttttctctggttttggaatttccacgttatattcttgtattgtgattgt 40195803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 17731169 - 17731101
Alignment:
Q  4 gctacatattgaacctaatttctttgtttttagatgcacccgtcagtagtactttaagcttatctctga 72  Q
    |||| |||||||||||| ||||||| || ||||||||||| |||||||| ||||||||||||| |||||    
T  17731169 gctatatattgaacctagtttctttattgttagatgcaccagtcagtagcactttaagcttatatctga 17731101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 19032400 - 19032332
Alignment:
Q  4 gctacatattgaacctaatttctttgtttttagatgcacccgtcagtagtactttaagcttatctctga 72  Q
    |||| |||||||||||| ||||||| || ||||||||||| |||||||| ||||||||||||| |||||    
T  19032400 gctatatattgaacctagtttctttattgttagatgcaccagtcagtagcactttaagcttatatctga 19032332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 96 - 167
Target Start/End: Complemental strand, 21344585 - 21344517
Alignment:
Q  96 ttttggagtttccacgttatattcttgtgttgtgattgtgtttattatttttcttcttcagccctattattt 167  Q
    |||| |||||| ||||||||||||||||||||||||||||    |||||||||||||||| || ||||||||    
T  21344585 ttttagagttttcacgttatattcttgtgttgtgattgtg---cttatttttcttcttcaaccttattattt 21344517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 1026835 - 1026883
Alignment:
Q  23 ttctttgtttttagatgcacccgtcagtagtactttaagcttatctctg 71  Q
    ||||||||||||||||||||| |||| ||||||| ||||||||| ||||    
T  1026835 ttctttgtttttagatgcaccagtcaatagtactataagcttatatctg 1026883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 21344779 - 21344727
Alignment:
Q  9 atattgaacctaatttctttgtttttagatgcacccgtcagtagtactttaag 61  Q
    ||||||||||||  || ||||||||||||||||||  ||||||| ||||||||    
T  21344779 atattgaacctaggttatttgtttttagatgcaccaatcagtagcactttaag 21344727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 83 - 174
Target Start/End: Original strand, 14508946 - 14509036
Alignment:
Q  83 gttttttctccggttttggagtttccacgt--tatattcttgtgttgtgattgtgtttattatttttcttcttcagccctattatttcctaaca 174  Q
    |||||||||| |||||||||||||||||||  ||||||||||||||||||||||||   ||||||||||||||||||||| |||||||||||||    
T  14508946 gttttttctctggttttggagtttccacgttatatattcttgtgttgtgattgtgt---ttatttttcttcttcagccctgttatttcctaaca 14509036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 84 - 137
Target Start/End: Original strand, 4528729 - 4528782
Alignment:
Q  84 ttttttctccggttttggagtttccacgttatattcttgtgttgtgattgtgtt 137  Q
    ||||||||||||||| | ||||||||||||||||||||||||||||||| ||||    
T  4528729 ttttttctccggtttcgaagtttccacgttatattcttgtgttgtgattatgtt 4528782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 85 - 176
Target Start/End: Original strand, 31322837 - 31322929
Alignment:
Q  85 tttttctccggttttggagtttccacgttatattc------ttgtgttgtgattgtgtttattatttttcttcttcagccctattatttcctaacagt 176  Q
    |||||||||| ||||||||||||||||||||||||      ||||||||||||||||    ||||||||||||||||||||  |||||||||||||||    
T  31322837 tttttctccgattttggagtttccacgttatattcttgtttttgtgttgtgattgtg---cttatttttcttcttcagccc--ttatttcctaacagt 31322929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 104 - 174
Target Start/End: Complemental strand, 45676607 - 45676540
Alignment:
Q  104 tttccacgttatattcttgtgttgtgattgtgtttattatttttcttcttcagccctattatttcctaaca 174  Q
    ||||||||||||||||||||||| | ||||||||   ||||||||||||||| |||| |||||||||||||    
T  45676607 tttccacgttatattcttgtgttataattgtgtt---tatttttcttcttcaaccctgttatttcctaaca 45676540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 10550114 - 10550051
Alignment:
Q  9 atattgaacctaatttctttgtttttagatgcacccgtcagtagtactttaagcttatctctga 72  Q
    ||||||||||||  ||||||||||||||||||||| |||||||| |||||||| |||| |||||    
T  10550114 atattgaacctaggttctttgtttttagatgcaccagtcagtagcactttaagtttatatctga 10550051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 14508745 - 14508813
Alignment:
Q  4 gctacatattgaacctaatttctttgtttttagatgcacccgtcagtagtactttaagcttatctctga 72  Q
    |||| ||||||||||||  ||||| ||||||||||| ||| |||||||| ||||||||||||| |||||    
T  14508745 gctatatattgaacctaggttcttagtttttagatgtaccagtcagtagcactttaagcttatatctga 14508813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 176
Target Start/End: Original strand, 8445696 - 8445753
Alignment:
Q  116 attcttgtgttgtgattgtgtttattatttttcttcttcagccctattatttcctaacagt 176  Q
    |||||||||| ||||||||||||||   ||||||||| ||||||| || ||||||||||||    
T  8445696 attcttgtgtagtgattgtgtttat---ttttcttctgcagccctgttgtttcctaacagt 8445753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 83 - 167
Target Start/End: Original strand, 20594841 - 20594922
Alignment:
Q  83 gttttttctccggttttggagtttccacgttatattcttgtgttgtgattgtgtttattatttttcttcttcagccctattattt 167  Q
    |||||||||  | ||||||||||| |||||||||||||||||||||||||||||   ||||||||||||||||||||| ||||||    
T  20594841 gttttttctttgattttggagttttcacgttatattcttgtgttgtgattgtgt---ttatttttcttcttcagcccttttattt 20594922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 4660213 - 4660143
Alignment:
Q  1 aatgctacatattgaacctaatttctttgtttttagatgcacccgtcagtagtactttaagcttatctctga 72  Q
    ||||||| |||||||||||| ||||||||||||| |||||||| |||||||| |||||||| |||| |||||    
T  4660213 aatgctatatattgaacctagtttctttgttttt-gatgcaccggtcagtagcactttaagattatatctga 4660143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 83 - 141
Target Start/End: Complemental strand, 33301020 - 33300962
Alignment:
Q  83 gttttttctccggttttggagtttccacgttatattcttgtgttgtgattgtgtttatt 141  Q
    |||||| ||||| ||||  ||||| ||||||||||||||||||||||||||||||||||    
T  33301020 gtttttcctccgattttaaagttttcacgttatattcttgtgttgtgattgtgtttatt 33300962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 81 - 118
Target Start/End: Original strand, 7371844 - 7371881
Alignment:
Q  81 tggttttttctccggttttggagtttccacgttatatt 118  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  7371844 tggttttttctccggttttagagtttccacgttatatt 7371881  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 126
Target Start/End: Original strand, 38472142 - 38472183
Alignment:
Q  85 tttttctccggttttggagtttccacgttatattcttgtgtt 126  Q
    |||||||||||||| | |||||||||||||| ||||||||||    
T  38472142 tttttctccggtttggaagtttccacgttatgttcttgtgtt 38472183  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 123
Target Start/End: Original strand, 10751298 - 10751342
Alignment:
Q  80 ctggttttttctccggttttggag-tttccacgttatattcttgt 123  Q
    |||||||||||||| ||||||||| |||| |||||||||||||||    
T  10751298 ctggttttttctccagttttggagttttcaacgttatattcttgt 10751342  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 33300948 - 33300900
Alignment:
Q  76 ggtcctggttttttctccggttttggagtttccacgttatattcttgtg 124  Q
    |||| ||||||||||| || || |||||||||||| |||||||||||||    
T  33300948 ggtcgtggttttttcttcgattgtggagtttccacattatattcttgtg 33300900  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 176
Target Start/End: Complemental strand, 33302495 - 33302436
Alignment:
Q  114 atattcttgtgttgtgattgtgtttattatttttcttcttcagccctattatttcctaacagt 176  Q
    ||||||||||||||||||||   |  ||||||||||||||||||  | |||||||||||||||    
T  33302495 atattcttgtgttgtgattg---tacttatttttcttcttcagctatgttatttcctaacagt 33302436  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 84 - 176
Target Start/End: Complemental strand, 7284504 - 7284415
Alignment:
Q  84 ttttttctccggttttggagtttccacgttatattcttgtgttgtgattgtgtttattatttttcttcttcagccctattatttcctaacagt 176  Q
    ||||||||||  ||||| ||||||||||||||||||||||||| ||||| ||    |||||||||||||||||| || ||||||| |||||||    
T  7284504 ttttttctccaattttgaagtttccacgttatattcttgtgttatgattatg---cttatttttcttcttcagctctgttatttcttaacagt 7284415  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 7278150 - 7278087
Alignment:
Q  9 atattgaacctaatttctttgtttttagatgcacccgtcagtagtactttaagcttatctctga 72  Q
    |||||| |||||  |||||||||| |||||||||| |||||||| ||||||||||||| |||||    
T  7278150 atattggacctaggttctttgtttgtagatgcaccagtcagtagcactttaagcttatatctga 7278087  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 392411 - 392343
Alignment:
Q  4 gctacatattgaacctaatttctttgtttttagatgcacccgtcagtagtactttaagcttatctctga 72  Q
    |||| ||||||||| || ||||||||||||||||| || | || ||||| ||||||||||||| |||||    
T  392411 gctatatattgaacgtagtttctttgtttttagatacatcagttagtagcactttaagcttatatctga 392343  T

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