View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10868_low_2 (Length: 468)
Name: NF10868_low_2
Description: NF10868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10868_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 422; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 1 - 450
Target Start/End: Original strand, 24634253 - 24634702
Alignment:
| Q |
1 |
acttgaacattcaaaccagtgttaagtgaggtttctctagtcggtcaagtaaaatattaatagtcaaatggtaccgtctctccatgccagtccggttctg |
100 |
Q |
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| T |
24634253 |
acttgaacattcaaaccagtgttaagtgaggtttctctagtcggtcaagtaaaatattaatagtcaaatggtatcgtctctccatgccagtccggttctg |
24634352 |
T |
|
| Q |
101 |
atatgaaaatgaaggttaaacatgtgtatctaaagattattgtgttttattgctggaaacaagtcttacaaaagcctagttctgatttcttgtaaatgaa |
200 |
Q |
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| T |
24634353 |
atatgaaaatgaaggttaaacatgtgtatctaaagattattgtgttttattgctggaaacaagtcttacaagagcctagttctgatttcttgtaaatgaa |
24634452 |
T |
|
| Q |
201 |
atgtctcatttattgataacgtgatgaattgatcataatgaactcaatggaccttatttatacatcagtctatatgaaagtgaagaagataacaaggaac |
300 |
Q |
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| T |
24634453 |
atgtctcatttattgataacttgatgaattgatcataatgaactcaatggaccttatttatacatcagtctatatgaaagtgaagaagataacaaggaac |
24634552 |
T |
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| Q |
301 |
aatagctaactagtaaacaggatcttctaatttatgtttcaattgtaaacttttataagtaaatttcaaggtttcaacacaaactgtgtatgtgttactg |
400 |
Q |
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| T |
24634553 |
aatagttaagtagtaaacaggatcttctaatttatgtttcaattgtaaacttctataagtaaatttcaaggtttcaacacaaactgtgtatgtgttactg |
24634652 |
T |
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| Q |
401 |
ctgggtttaaaatgtaattgtgtttctaattttcgacaaatgttggatta |
450 |
Q |
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| T |
24634653 |
ctgggtttaaaatgtaattgtgtttctaattttcaacaaatgttggatta |
24634702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 330 - 377
Target Start/End: Original strand, 24628511 - 24628559
Alignment:
| Q |
330 |
atttatgtttc-aattgtaaacttttataagtaaatttcaaggtttcaa |
377 |
Q |
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| T |
24628511 |
atttatgtttctaattgtaaacttttataagtaaatttcaaggtttcaa |
24628559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 342 - 384
Target Start/End: Complemental strand, 42542372 - 42542330
Alignment:
| Q |
342 |
attgtaaacttttataagtaaatttcaaggtttcaacacaaac |
384 |
Q |
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| T |
42542372 |
attgtaaacatttataagtaaatttcaaggtttcaacagaaac |
42542330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 32876842 - 32876770
Alignment:
| Q |
1 |
acttgaacattcaaaccagtgttaagtgaggtttctctagtcggtcaagtaaaatattaatagtcaaatggta |
73 |
Q |
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| T |
32876842 |
acttgaacaatcaaaccagtgttgagtgagatcttgctagtcggtcaagtaaggtattacaagtcacatggta |
32876770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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