View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10868_low_22 (Length: 245)
Name: NF10868_low_22
Description: NF10868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10868_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 35182403 - 35182179
Alignment:
| Q |
1 |
agatggatggttggagatggaactgggagagttcttcaatgaaggaggagatgataagcaggtggacataggtgtttgtgaggttaaaggtggtggttgg |
100 |
Q |
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| T |
35182403 |
agatggatggttggagatggaactgggagagttcttcaatgaaggaggagatgataagcaggtggacataggtgtttgtgaggtcaaaggtggtggttgg |
35182304 |
T |
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| Q |
101 |
aagggtggtcttgttgttcaaggaattgaaataaggcctaagactaaatcatgttgaaagaatgactaaaaccaagttaacatgttccgcacagacttca |
200 |
Q |
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| T |
35182303 |
aagggtggtcttgttgttcaaggaattgaaataaggcctaagactaaatcatgttgaaagaatgactaaaaccaagttaacatgtttcgcacagacttca |
35182204 |
T |
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| Q |
201 |
aacgtgcggtgcacatccaaacaca |
225 |
Q |
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| T |
35182203 |
aacgtgcggtgcacatccaaacaca |
35182179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 35178446 - 35178261
Alignment:
| Q |
1 |
agatggatggttggagatggaactgggagagttcttcaatgaaggaggagatgataagcaggtggacataggtgtttgtgaggttaaaggtggtggttgg |
100 |
Q |
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|||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
35178446 |
agatgggtggttggagatggaattgggagagttcttcaatgaaggaggaaatgataaggaggtggagataggtgtttgtgaggtcaaaggtggtggttgg |
35178347 |
T |
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| Q |
101 |
aagggtggtcttgttgttcaaggaattgaaataaggcctaagactaaatcatgttgaaagaatgactaaaaccaagttaacatgtt |
186 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||| | ||||||||||| |
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| T |
35178346 |
aagggtggtcttgttgttcaaggaattgaaataaggtctaagcctaaatcatgttgaatgaatgactaaaactatgttaacatgtt |
35178261 |
T |
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