View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10868_low_25 (Length: 241)
Name: NF10868_low_25
Description: NF10868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10868_low_25 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 9639073 - 9638854
Alignment:
| Q |
1 |
aaagggatagaactaactccaaggccagtttgaaatatagaacgtggtcaaacatccacccctccaaaatagaaaggtggacaacatgtgtagatgttaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
9639073 |
aaagggatagaactaactccaaggccagtttgaaatatagaacgtggtcaaacatccacccctccaaaataaaaaggtggataacatgtgtagatgttaa |
9638974 |
T |
|
| Q |
101 |
tcaaacactcagtcgtacaagtaaaaaatctccctcaactcagtcgtatgagcaagatataagttgactaagttcgaaatgtgcataaagacttattttc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||| |
|
|
| T |
9638973 |
tcaaacactcagtcgtacaagtaaaaaatctccctcaactcagtcgtatgagcaagatataagttgactaagtctggaatgtacataaagacttattttc |
9638874 |
T |
|
| Q |
201 |
ttaataatagggtgatggag |
220 |
Q |
| |
|
||||||||||| |||||||| |
|
|
| T |
9638873 |
ttaataataggatgatggag |
9638854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 173
Target Start/End: Complemental strand, 13716078 - 13715971
Alignment:
| Q |
66 |
aaaatagaaaggtggacaacatgtgtagatgttaatcaaacactcagtcgtacaagtaaaaaatctccctcaactcagtcgtatgagcaagatataagtt |
165 |
Q |
| |
|
||||||| || |||||||||||| ||| ||| || ||| |||||||||||||||||| || | |||||||||||| ||||||| ||||||| || |
|
|
| T |
13716078 |
aaaataggaatgtggacaacatgagtaaatgctagccaagcactcagtcgtacaagtacaagtttgccctcaactcagctgtatgagtaagatatcagcc |
13715979 |
T |
|
| Q |
166 |
gactaagt |
173 |
Q |
| |
|
|||||||| |
|
|
| T |
13715978 |
gactaagt |
13715971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University