View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10868_low_28 (Length: 228)
Name: NF10868_low_28
Description: NF10868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10868_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 15 - 209
Target Start/End: Original strand, 37429948 - 37430142
Alignment:
| Q |
15 |
agagatggtagacaaatgagcatgaaagggcaattgcagaaagacataaatgaatacattgcagaagaagaggaagtgatagatgatgatgcttcatcat |
114 |
Q |
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| T |
37429948 |
agagatggtagacaaataagcatgaaagggcaattgcagaaagacataaatgaatacattgcagaagaaggggaagtgatagatgatgatgcttcatcat |
37430047 |
T |
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| Q |
115 |
tgttgaacaatcacaagagaaagatggataattctccagctaggcaaccagagatgaagaaacggctcagttgcagttatacgaccggatatagg |
209 |
Q |
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| T |
37430048 |
tgttgaacaatcacaagagaaagatggataattctccagctaggcaaccagagatgaagaaacggctcggttgcagttatacgaccggatatagg |
37430142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 24 - 177
Target Start/End: Complemental strand, 37435181 - 37435026
Alignment:
| Q |
24 |
agacaaatgagcatgaaagggcaattgcagaaagacataaatgaatacattgcagaagaagaggaagtgatagat--gatgatgcttcatcattgttgaa |
121 |
Q |
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| T |
37435181 |
agacagatgagcatgaaaggacaattgcagaaagacatgaatgaatacattgcagaagaaggggaggtgatagatatgatgatgcttcatcattgttgaa |
37435082 |
T |
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| Q |
122 |
caatcacaagagaaagatggataattctccagctaggcaaccagagatgaagaaac |
177 |
Q |
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| T |
37435081 |
cagtcacaaaagaaagatggataatcctccagctaggcaaccagagatgaagaaac |
37435026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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