View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10868_low_29 (Length: 218)
Name: NF10868_low_29
Description: NF10868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10868_low_29 |
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| [»] scaffold0465 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 9e-97; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 28520034 - 28519828
Alignment:
| Q |
1 |
atgattgtgattgggcctttcttccgaccgtgaggaatagtggtgggatcatttctatttggcgaaaattcggttccaaccttcttttctcctttgcggg |
100 |
Q |
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| T |
28520034 |
atgattgtgattgagcctttcttccggctgtggggaatagtggtgggatcatttctatttggcgaaaatccaattccaaccttcttttctcctttgcggg |
28519935 |
T |
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| Q |
101 |
agaaggcttcgtgggagtttgtttagaatggggaaggaacaaagtgagatgttttgtggtgaatatttactcgaaatgtgatttagtggcgaaacaaaga |
200 |
Q |
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| T |
28519934 |
agaaggcttcgtgggagtttgtttagaatggggaaggaacaaagtgagatgttttgtggtgaatatttactcgaaatgtgatttagtggcgaaacaaaga |
28519835 |
T |
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| Q |
201 |
ttgtggg |
207 |
Q |
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||||||| |
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| T |
28519834 |
ttgtggg |
28519828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 54 - 182
Target Start/End: Original strand, 20135540 - 20135668
Alignment:
| Q |
54 |
tctatttggcgaaaattcggttccaaccttcttttctcctttgcgggagaaggcttcgtgggagtttgtttagaatggggaaggaacaaagtgagatgtt |
153 |
Q |
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| T |
20135540 |
tctatttggagaaaatccgtttcaaacatccttttctcttttgtgggtgaaggctttgtgggagtttgtttagaatggggatgtaagaaacaaagatgtt |
20135639 |
T |
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| Q |
154 |
ttgtggtgaatatttactcgaaatgtgat |
182 |
Q |
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| T |
20135640 |
ttgtggtgaacatttatttcaaatgtgat |
20135668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0465 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: scaffold0465
Description:
Target: scaffold0465; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 36 - 184
Target Start/End: Complemental strand, 6524 - 6376
Alignment:
| Q |
36 |
aatagtggtgggatcatttctatttggcgaaaattcggttccaaccttcttttctcctttgcgggagaaggcttcgtgggagtttgtttagaatggggaa |
135 |
Q |
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| T |
6524 |
aatagtggtggtattatttctatttggagaaaatccatttccaatcttcttttctcttttgtgggtgaaggttttgtgggagtttgtttagaatggggaa |
6425 |
T |
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| Q |
136 |
ggaacaaagtgagatgttttgtggtgaatatttactcgaaatgtgattt |
184 |
Q |
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| T |
6424 |
gtaataaagagagatgttttgtggtgaacatttattccaaatgtgattt |
6376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 146 - 207
Target Start/End: Complemental strand, 27411464 - 27411403
Alignment:
| Q |
146 |
gagatgttttgtggtgaatatttactcgaaatgtgatttagtggcgaaacaaagattgtggg |
207 |
Q |
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| T |
27411464 |
gagatgtttggtggtgaatatttactctaagtgtgatttggtggcaaaacaaagattgtggg |
27411403 |
T |
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