View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10868_low_30 (Length: 213)
Name: NF10868_low_30
Description: NF10868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10868_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 139; Significance: 6e-73; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 13 - 174
Target Start/End: Complemental strand, 44308894 - 44308732
Alignment:
| Q |
13 |
agcataggcttatgcaattcacaatttttaaatgagaaatcaaaactttcgcataattaatctcaatcgctaaatattaagaataaactgcaacggcaag |
112 |
Q |
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| T |
44308894 |
agcataggcttatgcaattcacaatttttaaatgagaaatcaaaactttcgcataattaatctcaatcgctaaatattaagaataaactgcaacagcaag |
44308795 |
T |
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| Q |
113 |
acaagagataacgacactacacaacaacattaagcag-ctaaagttacatataattatgtcaa |
174 |
Q |
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| T |
44308794 |
acaagagataacgacactacaaagcaacattaagcagactaaagttacatataattatctcaa |
44308732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 13 - 180
Target Start/End: Original strand, 44458251 - 44458437
Alignment:
| Q |
13 |
agcataggcttatgcaattcacaatttttaaatgagaaatcaaaactttcgcataattaatctcaatcgctaaatattaagaat---------------- |
96 |
Q |
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| T |
44458251 |
agcataggcttatgcaattcacaatttttaaatgagaaatcaaaactttcgcataattaatctcaatcgctaaatattaagaatttcagtaacaagaatt |
44458350 |
T |
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| Q |
97 |
--aaactgcaacggcaagacaagagataacgacactacacaacaacattaagcag-ctaaagttacatataattatgtcaaagggag |
180 |
Q |
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| T |
44458351 |
tcaaaatgcaacagcaagacaagagataacaacactacacagcaacattaagcagactaaaggtacatataattatctcaaggggag |
44458437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 13 - 180
Target Start/End: Original strand, 44465784 - 44465970
Alignment:
| Q |
13 |
agcataggcttatgcaattcacaatttttaaatgagaaatcaaaactttcgcataattaatctcaatcgctaaatattaagaat---------------- |
96 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44465784 |
agcataggcttatgcaattcacaatttttaaatgagaaatcaaaactttcgcataattaatctcaatcgctaaatattaagaatttcagtaacaagaatt |
44465883 |
T |
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| Q |
97 |
--aaactgcaacggcaagacaagagataacgacactacacaacaacattaagcag-ctaaagttacatataattatgtcaaagggag |
180 |
Q |
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| T |
44465884 |
tcaaaatgcaacagcaagacaagagataacaacactacacagcaacattaagcagactaaaggtacatataattatctcaaggggag |
44465970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 96
Target Start/End: Original strand, 27466859 - 27466930
Alignment:
| Q |
21 |
cttatgcaattcacaatttttaaatgagaaatcaaaactttcgcataattaatctcaatcgctaaatattaagaat |
96 |
Q |
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| T |
27466859 |
cttatgcatttcacaaattttacatgagaaatcaaaactttcgca----taatctcaatccctaaatataaagaat |
27466930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 180
Target Start/End: Original strand, 27466980 - 27467039
Alignment:
| Q |
122 |
aacgacactacacaacaacattaagcag-ctaaagttacatataattatgtcaaagggag |
180 |
Q |
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|||| |||| |||| ||||||||||||| |||||||||||||||||||| |||| ||||| |
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| T |
27466980 |
aacggcactgcacagcaacattaagcagtctaaagttacatataattatctcaaggggag |
27467039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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