View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10868_low_31 (Length: 205)
Name: NF10868_low_31
Description: NF10868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10868_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 18 - 198
Target Start/End: Original strand, 18029820 - 18030000
Alignment:
| Q |
18 |
agcaacaatgggcatggcacgttgtctaacggcatagattttgtcgtctacagaggttgtactcctgcgagcatgttcttcggctactgattccgagtat |
117 |
Q |
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| T |
18029820 |
agcaacaatgggcatggcacgttgtctaacggcatagattttgtcgtctacagaggttgtactcctgcgagcatgttcttcggctactgattccgagtat |
18029919 |
T |
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| Q |
118 |
tttgtgaaatcccacggagactgtgttttcttctttgaaactcgtggttctttgtactcttcttctttctctgctcctcct |
198 |
Q |
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| T |
18029920 |
tttgtgaaatcccacggagactgtgttttcttctttgaaactcgtggttctttgtactcttcttctttctcttctactcct |
18030000 |
T |
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Target: chr3 (Bit Score: 63; Significance: 1e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 53 - 171
Target Start/End: Original strand, 19680038 - 19680156
Alignment:
| Q |
53 |
agattttgtcgtctacagaggttgtactcctgcgagcatgttcttcggctactgattccgagtattttgtgaaatcccacggagactgtgttttcttctt |
152 |
Q |
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| T |
19680038 |
agattttatcgtctactgatgttgtactccggcgagcgtgttcttcagcaactgattcagagtattgagtgaagtcccatggagactgtgttttcttctt |
19680137 |
T |
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| Q |
153 |
tgaaactcgtggttctttg |
171 |
Q |
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| T |
19680138 |
cgaaactcgcggttctttg |
19680156 |
T |
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