View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10868_low_4 (Length: 457)
Name: NF10868_low_4
Description: NF10868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10868_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 224 - 432
Target Start/End: Original strand, 6695726 - 6695934
Alignment:
| Q |
224 |
gtgacaatggaaatatgtcaattcacattataattagccatgacccatgattaacctaattatatatatgaatgatggcttttacattatatcaagtagt |
323 |
Q |
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| T |
6695726 |
gtgacaatggaaatatgtcaattcacattataattagccatgacccatgattaacctaattatatatatgaatgatggcttttacattatatcaagtagt |
6695825 |
T |
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| Q |
324 |
acgtgattataagaaatgatggttatgattagactatacacccttctttgttccatcttttcaattttcattttgatatatacatctattttaatttgca |
423 |
Q |
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| T |
6695826 |
acgtgattataagaaatgatggttatgattagactatacacccttctttgttccatcttttcaattttcattttgatatatacatctattttaatttgca |
6695925 |
T |
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| Q |
424 |
ttattttaa |
432 |
Q |
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||||||||| |
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| T |
6695926 |
ttattttaa |
6695934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 9 - 147
Target Start/End: Original strand, 6695512 - 6695650
Alignment:
| Q |
9 |
agcaaaggccttgttgtggtgtcccttggtgtccaaatattatctctcacatgctgcaacgttaagaaaggtaaaagttgttgtcctctgcatgttatct |
108 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6695512 |
agcaaaggtcttgttgtggtgtcccttggtgtccaaatattatctctcacatgctgcaacgttaagaaaggtaaaagttgttgtcctctgcatgttatct |
6695611 |
T |
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| Q |
109 |
ctatctgcaatagtaattcattcattgcatatatattat |
147 |
Q |
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| T |
6695612 |
ctatctgcaatagtaattcattcattgcatatatattat |
6695650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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