View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10868_low_5 (Length: 451)
Name: NF10868_low_5
Description: NF10868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10868_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 42 - 439
Target Start/End: Complemental strand, 28507981 - 28507584
Alignment:
| Q |
42 |
agttgaaaatcagcttagaagcatgggaaagggatttgcttaataagtagtcaattaagagaatacctgtaactggtgtccaaaatggtcttcgaacatt |
141 |
Q |
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| T |
28507981 |
agttgaaaatcagcttagaagcatgggaaagggatttgcttaataagtagtcaattaagagaatacctgtaactggtgtccaaaatagtctttgaacatt |
28507882 |
T |
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| Q |
142 |
ttacttgcattttctattttacccatatgcagaggaagataaggagatgcccacaccgtgacatagatagtatccagggacgtttcttctacatccaatc |
241 |
Q |
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| T |
28507881 |
ttacttgcattttctattttacccatatgcagaggaagataaggagatgcccacactgtaacatagatagtatccagggacgtttcttctacatccaatc |
28507782 |
T |
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| Q |
242 |
tcataagaccagctatgtgaatcgaatgaccagcctaccacaattaattggtaaaagaatggagtacatgagattttaataaggcaaaagatgcaacaac |
341 |
Q |
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| T |
28507781 |
tcataagaccagctatgtgaatcgaatgaccagcctaccacaattaattggtaaaagaatgtagtacatgagattttaataaggcaaaagatgcaacaac |
28507682 |
T |
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| Q |
342 |
tctagcgcccaaattagcacacatatgtaaccaataatattaaattcaacgacacaaattagtatttaagtgcactaaccttaattctatatgtccta |
439 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28507681 |
tctagcgcccaaattagcacacatatgtaaccaataatattaaattcaacgacacaaattagtatttaagtgcactaaccttaattctatatgtccta |
28507584 |
T |
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