View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10868_low_6 (Length: 402)

Name: NF10868_low_6
Description: NF10868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10868_low_6
NF10868_low_6
[»] chr5 (5 HSPs)
chr5 (18-388)||(29711895-29712265)
chr5 (74-388)||(29688422-29688733)
chr5 (77-388)||(29696532-29696843)
chr5 (80-169)||(179357-179446)
chr5 (87-211)||(9120069-9120193)
[»] chr3 (1 HSPs)
chr3 (248-388)||(47451354-47451494)
[»] chr4 (9 HSPs)
chr4 (82-221)||(48147334-48147473)
chr4 (80-117)||(48863570-48863607)
chr4 (140-229)||(49043781-49043870)
chr4 (250-338)||(48903421-48903509)
chr4 (141-200)||(48864395-48864454)
chr4 (127-213)||(7790426-7790512)
chr4 (127-169)||(7878729-7878771)
chr4 (80-117)||(49040871-49040908)
chr4 (137-209)||(48853037-48853109)
[»] chr8 (2 HSPs)
chr8 (248-330)||(4030300-4030382)
chr8 (142-200)||(15349244-15349302)
[»] chr1 (3 HSPs)
chr1 (83-122)||(24310521-24310560)
chr1 (83-117)||(24367473-24367507)
chr1 (83-117)||(24416083-24416117)
[»] chr7 (1 HSPs)
chr7 (297-335)||(30124824-30124862)


Alignment Details
Target: chr5 (Bit Score: 355; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 18 - 388
Target Start/End: Complemental strand, 29712265 - 29711895
Alignment:
Q  18 caaagggagcttctagagttgactttgccagctgatataacatctgctcctagtaaagtgtatgatttatgggtatttagaggatgtctcagtctatggg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29712265 caaagggagcttctagagttgactttgccagctgatataacatctgctcctagtaaagtgtatgatttatgggtatttagaggatgtctcagtctatggg 29712166  T
Q  118 atatggcacatgataatggtacagttgaaatatgggtgatggaaaaatacaatgtgacatcttcttggactaagattcttgttttgtcttttgatggaat 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  29712165 atatggcacatgataatggtacagttgaaatatgggtgatggaaaaatacaatgtgacatcttcttggactaagactcttgttttgtcttttgatggaat 29712066  T
Q  218 tcccagtcattatttttgtccgaaatacgatacaaaaagtggtgatatcgttggaacaaatgctggtaatgtattggccaagtataatgacaaaggacaa 317  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  29712065 tcccagccattatttttgtccgaaatacgatacaaaaagtggtgatatcgttggaacaaatgctggtaatgtattggccaagtataatgagaaaggacaa 29711966  T
Q  318 ctgctagagcatcactcctactgtgacaatgaatatggatccctagtggttatgtatacagaatctctgct 388  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29711965 ctgctagagcatcagtcctactgtgacaatgaatatggatccctagtggttatgtatacagaatctctgct 29711895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 74 - 388
Target Start/End: Original strand, 29688422 - 29688733
Alignment:
Q  74 agtgtatgatttatgggtatttagaggatgtctcagtctatgggatatg-gcacatgataatggtacagttgaaatatgggtgatggaaaaatacaatgt 172  Q
    |||||||||||||||| |||| |||||||||||||||||||  |||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  29688422 agtgtatgatttatggctattcagaggatgtctcagtctatttgatatgtgcac-tgataatggtacagttgaaatatgggtgatgaaaaaatacaatgt 29688520  T
Q  173 gacatcttcttggactaagattcttgttttgtcttttgatggaattcccagtcattatttttgtccgaaatacgatacaaaaagtggtgatatcgttgga 272  Q
    |  ||| |||||||| |||| ||| ||| | ||||||| ||  ||||||| ||| || ||||||||||||||   |||||||||||||||||||||||||    
T  29688521 gcaatcgtcttggacaaagactctcgttctttcttttggtgacattcccattcactacttttgtccgaaatattgtacaaaaagtggtgatatcgttgga 29688620  T
Q  273 acaaatgctggtaatgtattggccaagtataatgacaaaggacaactgctagagcatcactcctactgtgacaatgaatatggatccctagtggttatgt 372  Q
    ||    |  | |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||  ||| |||||||||||||||||||||||||||    
T  29688621 ac---cgacgataatgtattggccaagtataatgataaaggacagctgctagagcatcactcctactcggaccatgaatatggatccctagtggttatgt 29688717  T
Q  373 atacagaatctctgct 388  Q
    ||||||||||||||||    
T  29688718 atacagaatctctgct 29688733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 77 - 388
Target Start/End: Original strand, 29696532 - 29696843
Alignment:
Q  77 gtatgatttatgggtatttagaggatgtctcagtctatgggatatggcacatgataatggtacagttgaaatatgggtgatggaaaaatacaatgtgaca 176  Q
    ||||||||||||||| | |||||||||||||  ||||||| ||||    | |||||  | |||| || |||||||||||||||||||||||||||||  |    
T  29696532 gtatgatttatgggtgtatagaggatgtctcgctctatggcatattttgcctgatagagttacatttcaaatatgggtgatggaaaaatacaatgtgcaa 29696631  T
Q  177 tcttcttggactaagattcttgttttgtcttttgatggaattcccagtcattatttttgtccgaaatacgatacaaaaagtggtgatatcgttggaacaa 276  Q
    || ||||||||||||| ||||||  ||||||||||||| | |||   ||| |  ||||| ||||||||| ||||||||||||||||||||||||||| ||    
T  29696632 tcctcttggactaagactcttgtcctgtcttttgatggcaatcctgctcactccttttggccgaaatactatacaaaaagtggtgatatcgttggaagaa 29696731  T
Q  277 atgctggtaatgtattggccaagtataatgacaaaggacaactgctagagcatcactcctactgtgacaatgaatatggatccctagtggttatgtatac 376  Q
    |     ||  || ||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||| | |||||| ||||| |||||||||||||||    
T  29696732 acatgcgttgtgcattggccaagtataatgacaaaggacagctgcaagaacatcactcctactgtgacagtcaatatgtatccccagtggttatgtatac 29696831  T
Q  377 agaatctctgct 388  Q
    ||||||||||||    
T  29696832 agaatctctgct 29696843  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 169
Target Start/End: Original strand, 179357 - 179446
Alignment:
Q  80 tgatttatgggtatttagaggatgtctcagtctatgggatatggcacatgataatggtacagttgaaatatgggtgatggaaaaatacaa 169  Q
    |||| ||||||||||| ||  || ||||||| |||||| |||||   ||||||||| |||||||||||||||||||||| || |||||||    
T  179357 tgatgtatgggtatttggacaatttctcagtatatgggctatggattatgataatgatacagttgaaatatgggtgatgaaagaatacaa 179446  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 211
Target Start/End: Original strand, 9120069 - 9120193
Alignment:
Q  87 tgggtatttagaggatgtctcagtctatgggatatggcacatgataatggtacagttgaaatatgggtgatggaaaaatacaatgtgacatcttcttgga 186  Q
    ||||||||| ||| || ||||||| |||||| |||||    || ||||| |||||||||||||||||||||| || ||||||| |||   || |||||||    
T  9120069 tgggtatttggagaatttctcagtatatgggctatggattttgctaatgatacagttgaaatatgggtgatgaaagaatacaaagtgcattcctcttgga 9120168  T
Q  187 ctaagattcttgttttgtcttttga 211  Q
      || | ||||||||||||| ||||    
T  9120169 agaaaactcttgttttgtctattga 9120193  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 248 - 388
Target Start/End: Complemental strand, 47451494 - 47451354
Alignment:
Q  248 tacaaaaagtggtgatatcgttggaacaaatgctggtaatgtattggccaagtataatgacaaaggacaactgctagagcatcactcctactgtgacaat 347  Q
    ||||||||||||||||||  |||||||| ||| || ||  | |||||  ||||||||||||||||||||  || |||||||||  ||||| ||| || ||    
T  47451494 tacaaaaagtggtgatattattggaacagatgatgataccggattggttaagtataatgacaaaggacagttgttagagcatcgttcctattgtaacgat 47451395  T
Q  348 gaatatggatccctagtggttatgtatacagaatctctgct 388  Q
      || ||||| || |||||||||||| ||||| ||||||||    
T  47451394 ccatgtggatgccaagtggttatgtacacagagtctctgct 47451354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 82 - 221
Target Start/End: Complemental strand, 48147473 - 48147334
Alignment:
Q  82 atttatgggtatttagaggatgtctcagtctatgggatatggcacatgataatggtacagttgaaatatgggtgatggaaaaatacaatgtgacatcttc 181  Q
    |||| ||||||||| ||  || ||||||||||  || |||||  ||||| ||| | | ||||||||||||||||||| || ||||||| |||   || ||    
T  48147473 atttgtgggtatttggacaatttctcagtctaacgggtatggatcatgacaatagcagagttgaaatatgggtgatgaaagaatacaaagtgcattcgtc 48147374  T
Q  182 ttggactaagattcttgttttgtcttttgatggaattccc 221  Q
    ||||||||||| ||||  ||||||| ||||||| ||||||    
T  48147373 ttggactaagactcttaatttgtctattgatggcattccc 48147334  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 80 - 117
Target Start/End: Original strand, 48863570 - 48863607
Alignment:
Q  80 tgatttatgggtatttagaggatgtctcagtctatggg 117  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  48863570 tgatttatgggtatttagaggatctctcagtctatggg 48863607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 140 - 229
Target Start/End: Complemental strand, 49043870 - 49043781
Alignment:
Q  140 agttgaaatatgggtgatggaaaaatacaatgtgacatcttcttggactaagattcttgttttgtcttttgatggaattcccagtcatta 229  Q
    ||||||||||||||||||| || ||||||| |||   || || |||||||||| ||||||||| ||| ||||||  ||||||| ||||||    
T  49043870 agttgaaatatgggtgatgaaagaatacaaagtgcattcgtcatggactaagactcttgttttttctattgatgtcattcccactcatta 49043781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 338
Target Start/End: Original strand, 48903421 - 48903509
Alignment:
Q  250 caaaaagtggtgatatcgttggaacaaatgctggtaatgtattggccaagtataatgacaaaggacaactgctagagcatcactcctac 338  Q
    |||||| |||||| ||| |||||||||| | ||||| |  |||||  ||||||||||||||||||||  | |||||| |||||||||||    
T  48903421 caaaaaatggtgacatcattggaacaaaagatggtactagattggtgaagtataatgacaaaggacagttcctagagtatcactcctac 48903509  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 141 - 200
Target Start/End: Original strand, 48864395 - 48864454
Alignment:
Q  141 gttgaaatatgggtgatggaaaaatacaatgtgacatcttcttggactaagattcttgtt 200  Q
    |||||||||||||||||| || ||||||| |||   || |||||||||||||||||||||    
T  48864395 gttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaagattcttgtt 48864454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 127 - 213
Target Start/End: Original strand, 7790426 - 7790512
Alignment:
Q  127 atgataatggtacagttgaaatatgggtgatggaaaaatacaatgtgacatcttcttggactaagattcttgttttgtcttttgatg 213  Q
    ||||||||| |||| ||||||||||||||||| || ||||||| |||   || ||||||||||| | ||||||| | ||| ||||||    
T  7790426 atgataatgatacaattgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaaaactcttgttctttctattgatg 7790512  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 127 - 169
Target Start/End: Original strand, 7878729 - 7878771
Alignment:
Q  127 atgataatggtacagttgaaatatgggtgatggaaaaatacaa 169  Q
    ||||||||| |||||||||||||||||||||| || |||||||    
T  7878729 atgataatgatacagttgaaatatgggtgatgaaagaatacaa 7878771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 117
Target Start/End: Complemental strand, 49040908 - 49040871
Alignment:
Q  80 tgatttatgggtatttagaggatgtctcagtctatggg 117  Q
    ||||||||||||||||| ||||| ||||||||||||||    
T  49040908 tgatttatgggtatttaaaggatttctcagtctatggg 49040871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 209
Target Start/End: Original strand, 48853037 - 48853109
Alignment:
Q  137 tacagttgaaatatgggtgatggaaaaatacaatgtgacatcttcttggactaagattcttgttttgtctttt 209  Q
    |||||||||||||||||| ||| || ||||||| |||   || ||||||||||||| ||||||| | ||||||    
T  48853037 tacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttctttctttt 48853109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 330
Target Start/End: Complemental strand, 4030382 - 4030300
Alignment:
Q  248 tacaaaaagtggtgatatcgttggaacaaatgctggtaatgtattggccaagtataatgacaaaggacaactgctagagcatc 330  Q
    ||||| ||||||||||||  |||||||| ||| ||||| || |||||  |||||| |||||||||||||  ||||||||||||    
T  4030382 tacaataagtggtgatattattggaacatatggtggtactgaattggtgaagtatgatgacaaaggacagttgctagagcatc 4030300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 200
Target Start/End: Original strand, 15349244 - 15349302
Alignment:
Q  142 ttgaaatatgggtgatggaaaaatacaatgtgacatcttcttggactaagattcttgtt 200  Q
    ||||||||||||||||| || ||||||| ||||  ||||||||||| ||||||||||||    
T  15349244 ttgaaatatgggtgatgaaagaatacaaagtgaactcttcttggacaaagattcttgtt 15349302  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 83 - 122
Target Start/End: Original strand, 24310521 - 24310560
Alignment:
Q  83 tttatgggtatttagaggatgtctcagtctatgggatatg 122  Q
    |||||||||||||||||||| |||||||||||||| ||||    
T  24310521 tttatgggtatttagaggatttctcagtctatgggttatg 24310560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 83 - 117
Target Start/End: Original strand, 24367473 - 24367507
Alignment:
Q  83 tttatgggtatttagaggatgtctcagtctatggg 117  Q
    |||||||||||||||||||| ||||||||||||||    
T  24367473 tttatgggtatttagaggatttctcagtctatggg 24367507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 83 - 117
Target Start/End: Original strand, 24416083 - 24416117
Alignment:
Q  83 tttatgggtatttagaggatgtctcagtctatggg 117  Q
    |||||||||||||||||||| ||||||||||||||    
T  24416083 tttatgggtatttagaggatttctcagtctatggg 24416117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 335
Target Start/End: Complemental strand, 30124862 - 30124824
Alignment:
Q  297 aagtataatgacaaaggacaactgctagagcatcactcc 335  Q
    |||| ||||||||||||||| ||||||||||||||||||    
T  30124862 aagtttaatgacaaaggacagctgctagagcatcactcc 30124824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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