View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10868_low_7 (Length: 374)
Name: NF10868_low_7
Description: NF10868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10868_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 16 - 364
Target Start/End: Original strand, 2919185 - 2919525
Alignment:
| Q |
16 |
cacaaggttcaatcctagcttatactaggcattacccttaatcaaattagggaattagggaaggaaaattgaaaatatgggcacagaagccaccccaaag |
115 |
Q |
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| T |
2919185 |
cacaaggttcaatcctagcttatactaagcattacccttaatcaaatt--------agggaaggaaaattgaaaatatgggcacagaagccaccccaaag |
2919276 |
T |
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| Q |
116 |
cttccaataattgacttcaataacctcaacttggaagccaagagtcctaattgggagttagtgaagtcccaagtctataaggcattagtagagtatggtt |
215 |
Q |
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| T |
2919277 |
cttccaataattgacttcaataacctcaacttggaagccaagagtcctaattgggagttagtgaagtcccaagtctataaggcattagtagagtatggtt |
2919376 |
T |
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| Q |
216 |
gctttgaagcagtttttgataaagttcctttagaccttcgcaaagccatatttgcttcactacaagagctctttgatctccctttagaaaccaagctact |
315 |
Q |
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| T |
2919377 |
gctttgaagcagtttttgataaagttcctttagaccttcgcaaagccatatttgcttcactacaagagctctttgatctccctttagaaaccaagctact |
2919476 |
T |
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| Q |
316 |
caatgtgtctaagaagccttatcatggttatgttggtcaatatcctatg |
364 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2919477 |
caatgtgtctaagaagccttatcatggttatgttggtcaatatcctatg |
2919525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 14 - 361
Target Start/End: Original strand, 2933973 - 2934312
Alignment:
| Q |
14 |
atcacaaggttcaatcctagcttatactaggcattacccttaatcaaattagggaattagggaaggaaaattgaaaatatgggcacagaagccaccccaa |
113 |
Q |
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| T |
2933973 |
atcacaaggttcaatcctagcttatactaagcattacccttaatcatatta--------gggaaggacaggtgaaaatatgggatcagaacacactcaaa |
2934064 |
T |
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| Q |
114 |
agcttccaataattgacttcaataacctcaacttggaagccaagagtcctaattgggagttagtgaagtcccaagtctataaggcattagtagagtatgg |
213 |
Q |
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| T |
2934065 |
agcttccactaattgacttcaataacctcaactttgaagccaaaaatcccaattgggagttagtgaagtcccaagtctataaggcattagtagagtatgg |
2934164 |
T |
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| Q |
214 |
ttgctttgaagcagtttttgataaagttcctttagaccttcgcaaagccatatttgcttcactacaagagctctttgatctccctttagaaaccaagcta |
313 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||| || |||||| |
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| T |
2934165 |
ttgctttgaagcaatttttgataaagttcctttagaccttcgcaaagccatatttacttcaatagaagagctctttgatctccctttagagactaagcta |
2934264 |
T |
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| Q |
314 |
ctcaatgtgtctaagaagccttatcatggttatgttggtcaatatcct |
361 |
Q |
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|||||||||||||| ||||||||| |||| ||| |||||||||||||| |
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| T |
2934265 |
ctcaatgtgtctaataagccttatgatggctatattggtcaatatcct |
2934312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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