View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10868_low_8 (Length: 371)

Name: NF10868_low_8
Description: NF10868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10868_low_8
NF10868_low_8
[»] chr7 (7 HSPs)
chr7 (14-309)||(449110-449409)
chr7 (292-345)||(23818426-23818479)
chr7 (292-348)||(4089128-4089184)
chr7 (292-346)||(25245228-25245282)
chr7 (292-341)||(2943218-2943267)
chr7 (292-341)||(27330593-27330642)
chr7 (285-346)||(41404016-41404077)
[»] chr3 (9 HSPs)
chr3 (18-141)||(9687513-9687636)
chr3 (18-128)||(9330672-9330779)
chr3 (78-141)||(9337403-9337466)
chr3 (292-346)||(10872673-10872727)
chr3 (292-346)||(22496952-22497006)
chr3 (292-346)||(27224581-27224635)
chr3 (292-346)||(48191716-48191770)
chr3 (25-102)||(9710458-9710535)
chr3 (292-341)||(54595796-54595845)
[»] chr1 (10 HSPs)
chr1 (290-341)||(29663672-29663723)
chr1 (292-346)||(34953897-34953951)
chr1 (288-337)||(46273866-46273915)
chr1 (288-340)||(29663747-29663798)
chr1 (292-340)||(50550204-50550252)
chr1 (292-347)||(46906861-46906916)
chr1 (292-346)||(24981926-24981980)
chr1 (292-346)||(27864504-27864558)
chr1 (292-345)||(14967310-14967363)
chr1 (292-340)||(46412710-46412758)
[»] chr6 (8 HSPs)
chr6 (288-346)||(18886309-18886367)
chr6 (292-346)||(34170079-34170133)
chr6 (295-345)||(34792458-34792508)
chr6 (292-346)||(6263436-6263490)
chr6 (292-346)||(10258305-10258359)
chr6 (292-346)||(29419872-29419926)
chr6 (292-341)||(15517175-15517224)
chr6 (292-341)||(34379820-34379869)
[»] chr4 (14 HSPs)
chr4 (292-346)||(12672530-12672584)
chr4 (288-341)||(5816620-5816673)
chr4 (292-341)||(18423977-18424026)
chr4 (292-345)||(21142092-21142145)
chr4 (292-341)||(55936072-55936121)
chr4 (292-346)||(39160899-39160953)
chr4 (292-346)||(56364411-56364465)
chr4 (292-341)||(4406247-4406296)
chr4 (292-341)||(34616221-34616270)
chr4 (288-341)||(40814750-40814803)
chr4 (292-341)||(44549317-44549366)
chr4 (292-341)||(52914083-52914132)
chr4 (292-340)||(32599565-32599613)
chr4 (288-340)||(40952355-40952407)
[»] chr5 (5 HSPs)
chr5 (292-345)||(18652850-18652903)
chr5 (288-354)||(22227062-22227128)
chr5 (288-346)||(33652828-33652886)
chr5 (292-340)||(43438340-43438388)
chr5 (292-338)||(37067621-37067667)
[»] scaffold0009 (1 HSPs)
scaffold0009 (292-346)||(145969-146023)
[»] scaffold0113 (1 HSPs)
scaffold0113 (292-341)||(40459-40508)
[»] chr2 (8 HSPs)
chr2 (292-341)||(32630491-32630540)
chr2 (292-340)||(11093537-11093585)
chr2 (288-340)||(33129081-33129133)
chr2 (292-346)||(11726580-11726634)
chr2 (292-341)||(1961394-1961443)
chr2 (292-341)||(4563949-4563998)
chr2 (292-341)||(31024177-31024226)
chr2 (292-341)||(38181766-38181815)
[»] chr8 (6 HSPs)
chr8 (289-336)||(10335224-10335271)
chr8 (292-346)||(2382587-2382641)
chr8 (288-346)||(7410566-7410624)
chr8 (292-346)||(10934688-10934742)
chr8 (292-352)||(17871848-17871908)
chr8 (292-352)||(17986279-17986339)
[»] scaffold0149 (1 HSPs)
scaffold0149 (292-346)||(24691-24745)
[»] scaffold1476 (1 HSPs)
scaffold1476 (292-340)||(744-792)
[»] scaffold0065 (1 HSPs)
scaffold0065 (292-336)||(36939-36983)


Alignment Details
Target: chr7 (Bit Score: 255; Significance: 1e-142; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 14 - 309
Target Start/End: Complemental strand, 449409 - 449110
Alignment:
14 agatgaagagcgccatgtggaacaaacagaacgaaagcgaatgaggtagagctcaatgttgctgagtttttgtgaaattagttgcagaagctctgaagga 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
449409 agatgaagagcgccatgtggaacaaacagaacgaaagcgaatgaggtagagctcaatgttgctgagtttttgtgaaattagttgcagaagctctgaagga 449310  T
114 agttgagaccaatctacctccatggatgaaattttgcacctgttcatatgaaa----gttcatggaaggcatatggaaaataaaaatttgttttagttga 209  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||    |||||||| |||||||||||||||||| |||||||||||||||    
449309 agttgagaccaatctacctccatggatggaattttgcacctgttcatatgaaagtacgttcatggtaggcatatggaaaataaatatttgttttagttga 449210  T
210 gtttgaatgaattgttgttgtttcatcacccaaccaaggacgaagggtgatggaaacaacaataatttaatctctcagatatatcatttaatgaatgaat 309  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||    
449209 gtttgaatgaattattgttgtttcatcacccaagcaaggacgaagggtgatagaaacaacaataatttaatatctcagatatatcatttaatgaatgaat 449110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 292 - 345
Target Start/End: Complemental strand, 23818479 - 23818426
Alignment:
292 atcatttaatgaatgaatctaatatactgatttttatttataatagtgactgga 345  Q
    |||||||||||||||||||||| ||  ||||||||  |||||||||||||||||    
23818479 atcatttaatgaatgaatctaaaatgttgatttttgcttataatagtgactgga 23818426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 348
Target Start/End: Complemental strand, 4089184 - 4089128
Alignment:
292 atcatttaatgaatgaatctaatatactgatttttatttataatagtgactggagag 348  Q
    |||||||||||||||||| ||| ||| |||||||| ||||||||||| || ||||||    
4089184 atcatttaatgaatgaatataaaatattgatttttgtttataatagtaaccggagag 4089128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 346
Target Start/End: Original strand, 25245228 - 25245282
Alignment:
292 atcatttaatgaatgaatctaatatactgatttttatttataatagtgactggag 346  Q
    |||||||||||||||||||||| ||  ||||||||  ||||||||||||| ||||    
25245228 atcatttaatgaatgaatctaaaatgttgatttttgcttataatagtgaccggag 25245282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 341
Target Start/End: Complemental strand, 2943267 - 2943218
Alignment:
292 atcatttaatgaatgaatctaatatactgatttttatttataatagtgac 341  Q
    |||||||||||||||||||||| ||  ||||||||  |||||||||||||    
2943267 atcatttaatgaatgaatctaaaatgttgatttttgcttataatagtgac 2943218  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 341
Target Start/End: Original strand, 27330593 - 27330642
Alignment:
292 atcatttaatgaatgaatctaatatactgatttttatttataatagtgac 341  Q
    |||||||||||||||||||||| ||| | |||||| | ||||||||||||    
27330593 atcatttaatgaatgaatctaaaatattaatttttgtgtataatagtgac 27330642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 346
Target Start/End: Complemental strand, 41404077 - 41404016
Alignment:
285 cagatatatcatttaatgaatgaatctaatatactgatttttatttataatagtgactggag 346  Q
    |||||| |||||||||||||||||||||| ||  | ||||||  ||||||||||||| ||||    
41404077 cagatacatcatttaatgaatgaatctaaaatgataatttttgcttataatagtgaccggag 41404016  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 141
Target Start/End: Original strand, 9687513 - 9687636
Alignment:
18 gaagagcgccatgtggaacaaacagaacgaaagcgaatgaggtagagctcaatgttgctgagtttttgtgaaattagttgcagaagctctgaaggaagtt 117  Q
    ||||||| ||| |||||||| || |||||||||||||  || ||||| ||| |||||  |||||||||||| |||||||||||||| |||   ||||| |    
9687513 gaagagcaccaagtggaacagacggaacgaaagcgaagaagatagagttcactgttgtcgagtttttgtgatattagttgcagaagttctctcggaagct 9687612  T
118 gagaccaatctacctccatggatg 141  Q
    ||||||||||| | ||||||||||    
9687613 gagaccaatctgcttccatggatg 9687636  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 128
Target Start/End: Original strand, 9330672 - 9330779
Alignment:
18 gaagagcgccatgtggaacaaacagaacgaaagcgaatgaggtagagctcaatgttgctgagtttttgtgaaattagttgcagaagctctgaaggaagtt 117  Q
    ||||| |||||||| ||||| |||||||||||||||| |||| | ||  || ||| |   |||||||||||||||||||| ||||| ||||||||||| |    
9330672 gaagaacgccatgttgaacatacagaacgaaagcgaaggaggcaaagtacagtgtcg---agtttttgtgaaattagttgaagaagttctgaaggaaggt 9330768  T
118 gagaccaatct 128  Q
    |||||||||||    
9330769 gagaccaatct 9330779  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 78 - 141
Target Start/End: Original strand, 9337403 - 9337466
Alignment:
78 agtttttgtgaaattagttgcagaagctctgaaggaagttgagaccaatctacctccatggatg 141  Q
    |||||||||||||||||||| ||||| ||||||||||| |||||||||||| |  |||||||||    
9337403 agtttttgtgaaattagttgaagaagttctgaaggaaggtgagaccaatctgcagccatggatg 9337466  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 292 - 346
Target Start/End: Complemental strand, 10872727 - 10872673
Alignment:
292 atcatttaatgaatgaatctaatatactgatttttatttataatagtgactggag 346  Q
    |||||||||||||||||| ||| ||| ||||||||  ||||||||||||||||||    
10872727 atcatttaatgaatgaatttaaaatattgatttttgcttataatagtgactggag 10872673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 292 - 346
Target Start/End: Complemental strand, 22497006 - 22496952
Alignment:
292 atcatttaatgaatgaatctaatatactgatttttatttataatagtgactggag 346  Q
    |||||||||||||||||||||| ||| | ||||||  ||||||||||||||||||    
22497006 atcatttaatgaatgaatctaaaatattaatttttgcttataatagtgactggag 22496952  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 346
Target Start/End: Complemental strand, 27224635 - 27224581
Alignment:
292 atcatttaatgaatgaatctaatatactgatttttatttataatagtgactggag 346  Q
    |||||||||||||| ||||||| ||  |||||||| |||||||||||||| ||||    
27224635 atcatttaatgaataaatctaaaatgttgatttttgtttataatagtgaccggag 27224581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 346
Target Start/End: Complemental strand, 48191770 - 48191716
Alignment:
292 atcatttaatgaatgaatctaatatactgatttttatttataatagtgactggag 346  Q
    |||||||||||||||||||||| ||  | |||||| |||||||||||||| ||||    
48191770 atcatttaatgaatgaatctaaaatgttaatttttgtttataatagtgaccggag 48191716  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 102
Target Start/End: Original strand, 9710458 - 9710535
Alignment:
25 gccatgtggaacaaacagaacgaaagcgaatgaggtagagctcaatgttgctgagtttttgtgaaattagttgcagaa 102  Q
    |||| |||||||| || ||||| |||||||||||||||| |||| ||||| | ||||| || || || ||||||||||    
9710458 gccaagtggaacatacggaacgcaagcgaatgaggtagatctcagtgttgttcagtttgtgggatatgagttgcagaa 9710535  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 341
Target Start/End: Complemental strand, 54595845 - 54595796
Alignment:
292 atcatttaatgaatgaatctaatatactgatttttatttataatagtgac 341  Q
    |||||||||||||||||||||| ||  ||||||||  |||||||||||||    
54595845 atcatttaatgaatgaatctaaaatgttgatttttgcttataatagtgac 54595796  T

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Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 290 - 341
Target Start/End: Complemental strand, 29663723 - 29663672
Alignment:
290 atatcatttaatgaatgaatctaatatactgatttttatttataatagtgac 341  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||||||||    
29663723 atatcatttaatgaatgaatctaaaatactggtttttatttataatagtgac 29663672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 292 - 346
Target Start/End: Complemental strand, 34953951 - 34953897
Alignment:
292 atcatttaatgaatgaatctaatatactgatttttatttataatagtgactggag 346  Q
    |||||||||||||||||| ||| ||| ||||||||  ||||||||||||||||||    
34953951 atcatttaatgaatgaatttaaaatattgatttttgcttataatagtgactggag 34953897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 337
Target Start/End: Complemental strand, 46273915 - 46273866
Alignment:
288 atatatcatttaatgaatgaatctaatatactgatttttatttataatag 337  Q
    |||||| ||||||||||||||||||||||| |||||||||  ||||||||    
46273915 atatattatttaatgaatgaatctaatataatgatttttacatataatag 46273866  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 340
Target Start/End: Original strand, 29663747 - 29663798
Alignment:
288 atatatcatttaatgaatgaatctaatatactgatttttatttataatagtga 340  Q
    |||||||||||||||||||||||||| ||| |||||||| ||||||| |||||    
29663747 atatatcatttaatgaatgaatctaa-atattgatttttgtttataacagtga 29663798  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 340
Target Start/End: Original strand, 50550204 - 50550252
Alignment:
292 atcatttaatgaatgaatctaatatactgatttttatttataatagtga 340  Q
    |||||||||||||||||||||| ||  |||||||| |||||||||||||    
50550204 atcatttaatgaatgaatctaaaatgttgatttttctttataatagtga 50550252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 292 - 347
Target Start/End: Complemental strand, 46906916 - 46906861
Alignment:
292 atcatttaatgaatgaatctaatatactgatttttatttataatagtgactggaga 347  Q
    |||||||||||||||||||||| |||  |||||||  ||||||||||||| |||||    
46906916 atcatttaatgaatgaatctaaaatatagatttttgcttataatagtgaccggaga 46906861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 346
Target Start/End: Original strand, 24981926 - 24981980
Alignment:
292 atcatttaatgaatgaatctaatatactgatttttatttataatagtgactggag 346  Q
    |||||||||||||||||||||| ||  ||||||||  ||||||||||||| ||||    
24981926 atcatttaatgaatgaatctaaaatgttgatttttgcttataatagtgaccggag 24981980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 346
Target Start/End: Original strand, 27864504 - 27864558
Alignment:
292 atcatttaatgaatgaatctaatatactgatttttatttataatagtgactggag 346  Q
    |||||||| |||||||| |||| | | ||||||||||||||||||||||| ||||    
27864504 atcatttattgaatgaacctaaaaaattgatttttatttataatagtgaccggag 27864558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 345
Target Start/End: Original strand, 14967310 - 14967363
Alignment:
292 atcatttaatgaatgaatctaatatactgatttttatttataatagtgactgga 345  Q
    |||||||||||||||||||||| ||  ||||||||  |||||||||||| ||||    
14967310 atcatttaatgaatgaatctaaaatgttgatttttgcttataatagtgattgga 14967363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 340
Target Start/End: Complemental strand, 46412758 - 46412710
Alignment:
292 atcatttaatgaatgaatctaatatactgatttttatttataatagtga 340  Q
    |||||||||||||||||||||| ||| | ||||||  ||||||||||||    
46412758 atcatttaatgaatgaatctaaaatattaatttttgcttataatagtga 46412710  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 288 - 346
Target Start/End: Complemental strand, 18886367 - 18886309
Alignment:
288 atatatcatttaatgaatgaatctaatatactgatttttatttataatagtgactggag 346  Q
    |||||||||||||||||||||||||| ||| | ||||||  ||||||||||||||||||    
18886367 atatatcatttaatgaatgaatctaaaatattaatttttgcttataatagtgactggag 18886309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 292 - 346
Target Start/End: Complemental strand, 34170133 - 34170079
Alignment:
292 atcatttaatgaatgaatctaatatactgatttttatttataatagtgactggag 346  Q
    |||||||||||||||||||||| ||  |||||||| ||||||||||||| |||||    
34170133 atcatttaatgaatgaatctaaaatgttgatttttgtttataatagtgaatggag 34170079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 295 - 345
Target Start/End: Complemental strand, 34792508 - 34792458
Alignment:
295 atttaatgaatgaatctaatatactgatttttatttataatagtgactgga 345  Q
    ||||||||||||||||||| ||| |||||||| |||||| |||||||||||    
34792508 atttaatgaatgaatctaaaatattgatttttgtttatagtagtgactgga 34792458  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 346
Target Start/End: Original strand, 6263436 - 6263490
Alignment:
292 atcatttaatgaatgaatctaatatactgatttttatttataatagtgactggag 346  Q
    ||||||||||||| |||||||| ||| ||||||||  ||||||||||||| ||||    
6263436 atcatttaatgaaggaatctaaaataatgattttttattataatagtgaccggag 6263490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 346
Target Start/End: Complemental strand, 10258359 - 10258305
Alignment:
292 atcatttaatgaatgaatctaatatactgatttttatttataatagtgactggag 346  Q
    |||||||||| ||||||||||| ||  |||||||| ||||||| |||||||||||    
10258359 atcatttaataaatgaatctaaaatgttgatttttgtttataacagtgactggag 10258305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 346
Target Start/End: Original strand, 29419872 - 29419926
Alignment:
292 atcatttaatgaatgaatctaatatactgatttttatttataatagtgactggag 346  Q
    |||||||||||||||||||||| ||  ||||||||| |||||||| ||| |||||    
29419872 atcatttaatgaatgaatctaaaatgttgatttttacttataataatgattggag 29419926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 341
Target Start/End: Original strand, 15517175 - 15517224
Alignment:
292 atcatttaatgaatgaatctaatatactgatttttatttataatagtgac 341  Q
    |||||||||||||||||||||| ||| ||||||||  |||||||| ||||    
15517175 atcatttaatgaatgaatctaaaatattgatttttgcttataataatgac 15517224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 341
Target Start/End: Original strand, 34379820 - 34379869
Alignment:
292 atcatttaatgaatgaatctaatatactgatttttatttataatagtgac 341  Q
    |||||||||||||||||||||| ||  ||||||||  |||||||||||||    
34379820 atcatttaatgaatgaatctaaaatgttgatttttgcttataatagtgac 34379869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 292 - 346
Target Start/End: Original strand, 12672530 - 12672584
Alignment:
292 atcatttaatgaatgaatctaatatactgatttttatttataatagtgactggag 346  Q
    |||||||||||||| ||||||| ||| |||||||| |||||||||||||||||||    
12672530 atcatttaatgaataaatctaaaatattgatttttctttataatagtgactggag 12672584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 341
Target Start/End: Original strand, 5816620 - 5816673
Alignment:
288 atatatcatttaatgaatgaatctaatatactgatttttatttataatagtgac 341  Q
    |||||||||||||||||||||||||| || |  | |||||||||||||||||||    
5816620 atatatcatttaatgaatgaatctaaaatgcaaagttttatttataatagtgac 5816673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 292 - 341
Target Start/End: Original strand, 18423977 - 18424026
Alignment:
292 atcatttaatgaatgaatctaatatactgatttttatttataatagtgac 341  Q
    |||||||||||||| ||||||||||| | |||||| ||||||||||||||    
18423977 atcatttaatgaataaatctaatatatttatttttgtttataatagtgac 18424026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 292 - 345
Target Start/End: Complemental strand, 21142145 - 21142092
Alignment:
292 atcatttaatgaatgaatctaatatactgatttttatttataatagtgactgga 345  Q
    ||||||||||| |||||||||| ||  |||||||| ||||||||||||||||||    
21142145 atcatttaatgcatgaatctaaaatgttgatttttgtttataatagtgactgga 21142092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 292 - 341
Target Start/End: Original strand, 55936072 - 55936121
Alignment:
292 atcatttaatgaatgaatctaatatactgatttttatttataatagtgac 341  Q
    |||||||||||||||||||||| ||| ||||||||  |||||||||||||    
55936072 atcatttaatgaatgaatctaaaatattgatttttgcttataatagtgac 55936121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 346
Target Start/End: Original strand, 39160899 - 39160953
Alignment:
292 atcatttaatgaatgaatctaatatactgatttttatttataatagtgactggag 346  Q
    |||||||||||||||||||||| ||   ||||||| |||||||||||||| ||||    
39160899 atcatttaatgaatgaatctaaaatgtagatttttgtttataatagtgaccggag 39160953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 346
Target Start/End: Original strand, 56364411 - 56364465
Alignment:
292 atcatttaatgaatgaatctaatatactgatttttatttataatagtgactggag 346  Q
    |||||||||||||||||||||| ||   |||||||| ||||||||||||| ||||    
56364411 atcatttaatgaatgaatctaaaatgtagatttttacttataatagtgaccggag 56364465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 341
Target Start/End: Complemental strand, 4406296 - 4406247
Alignment:
292 atcatttaatgaatgaatctaatatactgatttttatttataatagtgac 341  Q
    |||||||||||||| ||||||| ||  ||||||||| |||||||||||||    
4406296 atcatttaatgaataaatctaaaatgttgatttttacttataatagtgac 4406247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 341
Target Start/End: Complemental strand, 34616270 - 34616221
Alignment:
292 atcatttaatgaatgaatctaatatactgatttttatttataatagtgac 341  Q
    |||||||||||||||||||||| ||   ||||||| ||||||||||||||    
34616270 atcatttaatgaatgaatctaaaatgtagatttttgtttataatagtgac 34616221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 341
Target Start/End: Original strand, 40814750 - 40814803
Alignment:
288 atatatcatttaatgaatgaatctaatatactgatttttatttataatagtgac 341  Q
    |||||||||||||||||||||||||| ||  | |||||| ||||||| ||||||    
40814750 atatatcatttaatgaatgaatctaaaatgttaatttttgtttataacagtgac 40814803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 341
Target Start/End: Original strand, 44549317 - 44549366
Alignment:
292 atcatttaatgaatgaatctaatatactgatttttatttataatagtgac 341  Q
    |||||||||| ||||||||||| ||  ||||||||| |||||||||||||    
44549317 atcatttaattaatgaatctaaaatgttgatttttacttataatagtgac 44549366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 341
Target Start/End: Original strand, 52914083 - 52914132
Alignment:
292 atcatttaatgaatgaatctaatatactgatttttatttataatagtgac 341  Q
    |||||||||||||||||||||| ||| | ||||||  |||||||||||||    
52914083 atcatttaatgaatgaatctaaaatattaatttttgcttataatagtgac 52914132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 340
Target Start/End: Original strand, 32599565 - 32599613
Alignment:
292 atcatttaatgaatgaatctaatatactgatttttatttataatagtga 340  Q
    |||||||||| ||||||||||| ||| | ||||||| ||||||||||||    
32599565 atcatttaataaatgaatctaaaatattaatttttacttataatagtga 32599613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 340
Target Start/End: Complemental strand, 40952407 - 40952355
Alignment:
288 atatatcatttaatgaatgaatctaatatactgatttttatttataatagtga 340  Q
    |||||||||||||||||||||||||| ||  ||||| ||  ||||||||||||    
40952407 atatatcatttaatgaatgaatctaaaatgttgattattgcttataatagtga 40952355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 292 - 345
Target Start/End: Original strand, 18652850 - 18652903
Alignment:
292 atcatttaatgaatgaatctaatatactgatttttatttataatagtgactgga 345  Q
    |||||||||||||||||||||| ||  |||||||| ||||||||||||||||||    
18652850 atcatttaatgaatgaatctaaaatgttgatttttgtttataatagtgactgga 18652903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 288 - 354
Target Start/End: Original strand, 22227062 - 22227128
Alignment:
288 atatatcatttaatgaatgaatctaatatactgatttttatttataatagtgactggagagagtact 354  Q
    ||||||||||||||||||||| |||| |   ||||||||  ||||||||||||| ||||||||||||    
22227062 atatatcatttaatgaatgaacctaaaacgttgatttttgcttataatagtgaccggagagagtact 22227128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 288 - 346
Target Start/End: Complemental strand, 33652886 - 33652828
Alignment:
288 atatatcatttaatgaatgaatctaatatactgatttttatttataatagtgactggag 346  Q
    ||||||||||||||||||||||  || ||| | |||||||||||||||||||| |||||    
33652886 atatatcatttaatgaatgaataaaaaatattaatttttatttataatagtgattggag 33652828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 340
Target Start/End: Original strand, 43438340 - 43438388
Alignment:
292 atcatttaatgaatgaatctaatatactgatttttatttataatagtga 340  Q
    |||||||||||||||||||||| ||| | |||||| |||||||||||||    
43438340 atcatttaatgaatgaatctaaaatattaatttttgtttataatagtga 43438388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 338
Target Start/End: Complemental strand, 37067667 - 37067621
Alignment:
292 atcatttaatgaatgaatctaatatactgatttttatttataatagt 338  Q
    |||||||||||||||||||||| ||| | |||||| |||||||||||    
37067667 atcatttaatgaatgaatctaaaatattaatttttgtttataatagt 37067621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 292 - 346
Target Start/End: Complemental strand, 146023 - 145969
Alignment:
292 atcatttaatgaatgaatctaatatactgatttttatttataatagtgactggag 346  Q
    |||||||||||||||||||||| ||  |||||||| |||||||||||||| ||||    
146023 atcatttaatgaatgaatctaaaatgatgatttttgtttataatagtgaccggag 145969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 292 - 341
Target Start/End: Complemental strand, 40508 - 40459
Alignment:
292 atcatttaatgaatgaatctaatatactgatttttatttataatagtgac 341  Q
    |||||||||||||| ||||||| ||  |||||||||||||||||||||||    
40508 atcatttaatgaataaatctaaaatgttgatttttatttataatagtgac 40459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 292 - 341
Target Start/End: Original strand, 32630491 - 32630540
Alignment:
292 atcatttaatgaatgaatctaatatactgatttttatttataatagtgac 341  Q
    |||||||||||||| ||||||| ||  |||||||||||||||||||||||    
32630491 atcatttaatgaataaatctaaaatgttgatttttatttataatagtgac 32630540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 340
Target Start/End: Complemental strand, 11093585 - 11093537
Alignment:
292 atcatttaatgaatgaatctaatatactgatttttatttataatagtga 340  Q
    |||||||||||||| ||||||| ||| ||||||||| ||||||||||||    
11093585 atcatttaatgaatcaatctaaaatattgatttttacttataatagtga 11093537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 340
Target Start/End: Complemental strand, 33129133 - 33129081
Alignment:
288 atatatcatttaatgaatgaatctaatatactgatttttatttataatagtga 340  Q
    |||||| |||||||||||||| |||| ||| ||||||||| ||||||||||||    
33129133 atatattatttaatgaatgaacctaaaatattgatttttacttataatagtga 33129081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 346
Target Start/End: Original strand, 11726580 - 11726634
Alignment:
292 atcatttaatgaatgaatctaatatactgatttttatttataatagtgactggag 346  Q
    |||||||||||||||||||||| ||  | ||||||  ||||||||||||||||||    
11726580 atcatttaatgaatgaatctaaaatgttaatttttgcttataatagtgactggag 11726634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 341
Target Start/End: Original strand, 1961394 - 1961443
Alignment:
292 atcatttaatgaatgaatctaatatactgatttttatttataatagtgac 341  Q
    |||||||||||||||||||||| ||  ||||||||  |||||||||||||    
1961394 atcatttaatgaatgaatctaaaatgttgatttttgcttataatagtgac 1961443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 341
Target Start/End: Original strand, 4563949 - 4563998
Alignment:
292 atcatttaatgaatgaatctaatatactgatttttatttataatagtgac 341  Q
    ||||||||||  |||||||||| ||| ||||||||| |||||||||||||    
4563949 atcatttaatagatgaatctaaaatattgatttttacttataatagtgac 4563998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 341
Target Start/End: Complemental strand, 31024226 - 31024177
Alignment:
292 atcatttaatgaatgaatctaatatactgatttttatttataatagtgac 341  Q
    |||||||||||||||||||||| ||  ||||||||  |||||||||||||    
31024226 atcatttaatgaatgaatctaaaatgttgatttttgcttataatagtgac 31024177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 341
Target Start/End: Complemental strand, 38181815 - 38181766
Alignment:
292 atcatttaatgaatgaatctaatatactgatttttatttataatagtgac 341  Q
    |||||||||||||||||||||| ||| ||||||||  |||||||| ||||    
38181815 atcatttaatgaatgaatctaaaatattgatttttgcttataataatgac 38181766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 289 - 336
Target Start/End: Original strand, 10335224 - 10335271
Alignment:
289 tatatcatttaatgaatgaatctaatatactgatttttatttataata 336  Q
    ||||||||||||| ||||||||||| ||| |||||||| |||||||||    
10335224 tatatcatttaataaatgaatctaaaatattgatttttgtttataata 10335271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 346
Target Start/End: Complemental strand, 2382641 - 2382587
Alignment:
292 atcatttaatgaatgaatctaatatactgatttttatttataatagtgactggag 346  Q
    |||||||||||||||||||| | ||||  | |||| |||||||||||||||||||    
2382641 atcatttaatgaatgaatctgaaatacaaagttttgtttataatagtgactggag 2382587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 346
Target Start/End: Complemental strand, 7410624 - 7410566
Alignment:
288 atatatcatttaatgaatgaatctaatatactgatttttatttataatagtgactggag 346  Q
    |||||||||||| ||||||||||||||| | | | ||||  ||||||||||||||||||    
7410624 atatatcatttattgaatgaatctaataaattaaattttgcttataatagtgactggag 7410566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 346
Target Start/End: Original strand, 10934688 - 10934742
Alignment:
292 atcatttaatgaatgaatctaatatactgatttttatttataatagtgactggag 346  Q
    |||||||||||||||||||||| ||  ||||||||  ||||||||||||| ||||    
10934688 atcatttaatgaatgaatctaaaatgttgatttttgcttataatagtgaccggag 10934742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 352
Target Start/End: Original strand, 17871848 - 17871908
Alignment:
292 atcatttaatgaatgaatctaatatactgatttttatttataatagtgactggagagagta 352  Q
    ||||||||||||||||| |||| | | ||||||||  |||||||||||||| ||| |||||    
17871848 atcatttaatgaatgaacctaaaaaattgatttttgcttataatagtgactagagggagta 17871908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 352
Target Start/End: Original strand, 17986279 - 17986339
Alignment:
292 atcatttaatgaatgaatctaatatactgatttttatttataatagtgactggagagagta 352  Q
    ||||||||||||||||| |||| |   ||||||||| ||||||||||||  ||||||||||    
17986279 atcatttaatgaatgaacctaaaaagttgatttttacttataatagtgatcggagagagta 17986339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0149 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0149
Description:

Target: scaffold0149; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 346
Target Start/End: Original strand, 24691 - 24745
Alignment:
292 atcatttaatgaatgaatctaatatactgatttttatttataatagtgactggag 346  Q
    |||||||||||||||||||||| ||| | ||||||  ||||||||||||| ||||    
24691 atcatttaatgaatgaatctaaaatattaatttttgcttataatagtgaccggag 24745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1476 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1476
Description:

Target: scaffold1476; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 340
Target Start/End: Original strand, 744 - 792
Alignment:
292 atcatttaatgaatgaatctaatatactgatttttatttataatagtga 340  Q
    |||||||||||||||||||||| ||| | |||||  |||||||||||||    
744 atcatttaatgaatgaatctaaaatattaattttagtttataatagtga 792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 336
Target Start/End: Original strand, 36939 - 36983
Alignment:
292 atcatttaatgaatgaatctaatatactgatttttatttataata 336  Q
    |||||||||||||||||||||| ||  |||||||| |||||||||    
36939 atcatttaatgaatgaatctaaaatgttgatttttgtttataata 36983  T

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