View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10869_3 (Length: 478)
Name: NF10869_3
Description: NF10869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10869_3 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 10 - 478
Target Start/End: Complemental strand, 27640434 - 27639966
Alignment:
| Q |
10 |
aagaaaatgatgaaaggagggcataaaaagccctccaaatcggattcaaacgatccaccaccgtccggtaacaaccgcaattcagcagctccggttatcg |
109 |
Q |
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| T |
27640434 |
aagaaaatgatgaaaggagggcataaaaagccctccaaatcggattcaaccgatccaccaccgtccggtaacaaccgcaattcagcagctccggttatcg |
27640335 |
T |
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| Q |
110 |
tcaaccatggctcccgtggcagtgcctccaccgtaaattccggcgtcgtgatgcctttgactccatcttccggtacaatggaacccgttcctttattccg |
209 |
Q |
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| T |
27640334 |
tcaaccatggctcccgtggcggtgcctccaccgtaaattccggcgtcgtgatgcctttgactccatcttccggtacaatggaacccgttcctttattccg |
27640235 |
T |
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| Q |
210 |
cgatgttccggtttctgagagacaaaatatctttctgaggaaacttcatgtatgttgtttctcgcttgatttcactgatacgctgaagagcgttcgcgaa |
309 |
Q |
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| T |
27640234 |
cgatgttccggtttccgagagacaaaatatctttctgaggaaacttcatgtatgttgtttctcgcttgatttcactgatacgctgaagagcgttcgcgaa |
27640135 |
T |
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| Q |
310 |
aaagagatcaagcgccaagctttgatagagcttgttgagtttattcaatcgggttcggggaaaatttcggagaattgtcaagaagagatgattaggatga |
409 |
Q |
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| T |
27640134 |
aaagagatcaagcgtcaagctttgatagagcttgttgagtttattcaatcgggttcggggaaaatttcggagaattgtcaagaagagatgattaggatga |
27640035 |
T |
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| Q |
410 |
tatctatcaacattttccggtgcttgccgcctgcgtcgcatgagaacaccgggactgagccgactgatc |
478 |
Q |
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| T |
27640034 |
tatctatcaacattttccggtgcttgccgcctgcgtcgcatgagaacaccgggactgagccgactgatc |
27639966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 301 - 401
Target Start/End: Original strand, 41351255 - 41351355
Alignment:
| Q |
301 |
gttcgcgaaaaagagatcaagcgccaagctttgatagagcttgttgagtttattcaatcgggttcggggaaaatttcggagaattgtcaagaagagatga |
400 |
Q |
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| T |
41351255 |
gttcgagagaaagaaatcaagagacaaactttgatggaattggttgaatttattcaatctggttcgagtaagatatcggagatttgtcaagaagagatga |
41351354 |
T |
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| Q |
401 |
t |
401 |
Q |
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| T |
41351355 |
t |
41351355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 10 - 58
Target Start/End: Original strand, 41351018 - 41351066
Alignment:
| Q |
10 |
aagaaaatgatgaaaggagggcataaaaagccctccaaatcggattcaa |
58 |
Q |
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| T |
41351018 |
aagaaattaatgaaaggagggcagaagaagccctccaaatccgattcaa |
41351066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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