View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1086_high_3 (Length: 397)
Name: NF1086_high_3
Description: NF1086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1086_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 83 - 392
Target Start/End: Original strand, 50419784 - 50420093
Alignment:
| Q |
83 |
ctccatataatattcaccttcactgtggctggtttgcttctgcaagaataatcaaccctaaattgttcaagagactatcttttgatgattgtttggtgaa |
182 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50419784 |
ctccatataatattcaccttcactgtggctggtttgcttctgcaagaataatcaaccctaaattgttcaagagactatcttttgatgattgtttggtgaa |
50419883 |
T |
|
| Q |
183 |
tggaggaaaacctttaacctctagtcaaatcattagattcacttataccaattcttttgtttatcctcttgcactcaagtctgccaaattttgctgactc |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50419884 |
tggaggaaaacctttaacctctagtcaaatcattagattcacttataccaattcttttgtttatcctcttgcactcaagtctgccaaattttgctgactc |
50419983 |
T |
|
| Q |
283 |
cgaaaaatagtcccgatagattttcttgcaaaaaactaagaacaaaaatgaattcataacacaggagtaatctgcaagaaacttcaagcaaaaaaggcgt |
382 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
50419984 |
cgaaaaatagtcccgatagattttcttgcaaaaaactaagaacaaaaatgaattcataacacaggagtattctgcaagaaacttcaagcaaaaaaggcgt |
50420083 |
T |
|
| Q |
383 |
tcatctcact |
392 |
Q |
| |
|
|||| ||||| |
|
|
| T |
50420084 |
tcatttcact |
50420093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 105; Significance: 2e-52; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 83 - 279
Target Start/End: Complemental strand, 13046180 - 13045984
Alignment:
| Q |
83 |
ctccatataatattcaccttcactgtggctggtttgcttctgcaagaataatcaaccctaaattgttcaagagactatcttttgatgattgtttggtgaa |
182 |
Q |
| |
|
|||| ||| |||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| | |
|
|
| T |
13046180 |
ctccttatgatatccatcttcactgtggttggtttgcttctgcaagaataatcaaccctaaattgttcaagagactctcttatgatgattgtttggtgca |
13046081 |
T |
|
| Q |
183 |
tggaggaaaacctttaacctctagtcaaatcattagattcacttataccaattcttttgtttatcctcttgcactcaagtctgccaaattttgctga |
279 |
Q |
| |
|
|||||| || |||||||| |||| || || ||||||||||||||| | ||||||||| | || ||||||||| |||||||||| | |||||||||| |
|
|
| T |
13046080 |
tggagggaagcctttaacttctaaccagattattagattcacttattctaattcttttatgtaccctcttgcattcaagtctgctagattttgctga |
13045984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 100 - 279
Target Start/End: Original strand, 8997075 - 8997251
Alignment:
| Q |
100 |
cttcactgtggctggtttgcttctgcaagaataatcaaccctaaattgttcaagagactatcttttgatgattgtttggtgaatggaggaaaacctttaa |
199 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| ||| |||| |||||| |||||||| |||| || | | |||||||||||||||| || ||||| | |
|
|
| T |
8997075 |
cttcactgtggttggtttgcttctgcaagaataaacaatcctagattgtttaagagactctcttatg--gttcgtttggtgaatggagggaagccttt-a |
8997171 |
T |
|
| Q |
200 |
cctctagtcaaatcattagattcacttataccaattcttttgtttatcctcttgcactcaagtctgccaaattttgctga |
279 |
Q |
| |
|
| ||||| ||||| ||||||||||||||| | ||||| || | || ||||||||| |||| ||||| | |||||||||| |
|
|
| T |
8997172 |
cttctagccaaattattagattcacttattctaattcccttatgtaccctcttgcattcaaatctgctagattttgctga |
8997251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 100 - 279
Target Start/End: Original strand, 9013198 - 9013374
Alignment:
| Q |
100 |
cttcactgtggctggtttgcttctgcaagaataatcaaccctaaattgttcaagagactatcttttgatgattgtttggtgaatggaggaaaacctttaa |
199 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| ||| |||| |||||| |||||||| |||| || | | |||||||||||||||| || ||||| | |
|
|
| T |
9013198 |
cttcactgtggttggtttgcttctgcaagaataaacaatcctagattgtttaagagactctcttatg--gttggtttggtgaatggagggaagccttt-a |
9013294 |
T |
|
| Q |
200 |
cctctagtcaaatcattagattcacttataccaattcttttgtttatcctcttgcactcaagtctgccaaattttgctga |
279 |
Q |
| |
|
| ||||| || || ||||||||||||||| | ||||| || | | ||||||||| |||||||||| | ||||| |||| |
|
|
| T |
9013295 |
cttctagccagattattagattcacttattctaattcccttatgaaacctcttgcattcaagtctgctagattttcctga |
9013374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 100 - 158
Target Start/End: Original strand, 8979797 - 8979855
Alignment:
| Q |
100 |
cttcactgtggctggtttgcttctgcaagaataatcaaccctaaattgttcaagagact |
158 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| ||| |||| |||||| |||||||| |
|
|
| T |
8979797 |
cttcactgtggttggtttgcttctgcaagaataaacaatcctagattgtttaagagact |
8979855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 144 - 279
Target Start/End: Original strand, 9030892 - 9031024
Alignment:
| Q |
144 |
attgttcaagagactatcttttgatgattgtttggtgaatggaggaaaacctttaacctctagtcaaatcattagattcacttataccaattcttttgtt |
243 |
Q |
| |
|
||||||||||||||| |||| || | | |||||||||||||||| || |||||| | ||||| ||||| ||||||||||||||| | ||||| || | |
|
|
| T |
9030892 |
attgttcaagagactctcttatggt--tcgtttggtgaatggagggaagccttta-cttctagccaaattattagattcacttattctaattcccttatg |
9030988 |
T |
|
| Q |
244 |
tatcctcttgcactcaagtctgccaaattttgctga |
279 |
Q |
| |
|
| ||||||||| |||||||||| | |||||||||| |
|
|
| T |
9030989 |
tgccctcttgcattcaagtctgctagattttgctga |
9031024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University