View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1086_high_4 (Length: 322)
Name: NF1086_high_4
Description: NF1086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1086_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 12 - 314
Target Start/End: Original strand, 36570169 - 36570493
Alignment:
| Q |
12 |
ggatcatctcatatatcttgcaatattaggaaacttgattgcttgtacttcataatcatattacggaaaagatactatccctgac--------------- |
96 |
Q |
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| T |
36570169 |
ggatcatctcatatatcttgcaatattaggaaacttgattgcttgtacttcataatcatattacggaaaagatactatccctgactccttgttggtggtg |
36570268 |
T |
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| Q |
97 |
-----tccagttcatgtttcttgcctggaaccatctactctttctcgtaaaatgttccttttgctcttaagaatcttcttatcttagttcataggtgaca |
191 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36570269 |
atgactccagttcatgtttcttgcctggaaccatctactctttctcgcaaaatgttccttttgctcttaagaatcttcttatcttagttcataggtgaca |
36570368 |
T |
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| Q |
192 |
attagtgtgcagcgtataacaaataaaaaatttagtgcacggaaggaaaatgaactaagaatccattaacagtctccttagaatct--acagtgtcatac |
289 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
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| T |
36570369 |
attagtgtgcagcgtataacaaacaaaaaatttagtgcacggaaggaaaatgaactaagaatccattaacattctccttagaatctacacagtgtcatac |
36570468 |
T |
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| Q |
290 |
caaacttttcactccatcctttgtt |
314 |
Q |
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||||||||||||||||||||||||| |
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| T |
36570469 |
caaacttttcactccatcctttgtt |
36570493 |
T |
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