View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1086_high_7 (Length: 263)

Name: NF1086_high_7
Description: NF1086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1086_high_7
NF1086_high_7
[»] chr3 (6 HSPs)
chr3 (160-263)||(39871918-39872021)
chr3 (162-263)||(3026656-3026757)
chr3 (196-257)||(25529726-25529787)
chr3 (196-246)||(39870644-39870694)
chr3 (82-113)||(39871840-39871871)
chr3 (203-243)||(3149456-3149496)
[»] chr1 (8 HSPs)
chr1 (160-263)||(35382824-35382928)
chr1 (172-257)||(32849713-32849798)
chr1 (196-254)||(11429419-11429477)
chr1 (196-257)||(11431137-11431198)
chr1 (196-246)||(35381575-35381625)
chr1 (203-243)||(13223111-13223151)
chr1 (203-243)||(13229095-13229135)
chr1 (197-257)||(32848004-32848064)
[»] chr7 (4 HSPs)
chr7 (172-257)||(37556316-37556401)
chr7 (203-260)||(30045963-30046020)
chr7 (203-243)||(38758142-38758182)
chr7 (203-243)||(38756858-38756898)
[»] chr5 (2 HSPs)
chr5 (196-257)||(41282064-41282125)
chr5 (203-243)||(33489724-33489764)
[»] chr4 (2 HSPs)
chr4 (203-260)||(11148527-11148584)
chr4 (203-243)||(34538324-34538364)
[»] chr2 (3 HSPs)
chr2 (196-245)||(9261663-9261712)
chr2 (203-243)||(28167151-28167191)
chr2 (203-243)||(44904726-44904766)


Alignment Details
Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 160 - 263
Target Start/End: Original strand, 39871918 - 39872021
Alignment:
Q  160 atagtggtttttaaaaattgatgtttacgnnnnnnnaattacatccctatgtaaaaatatgtttttggttttagtccctctacttaactcagttggcaac 259  Q
    |||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  39871918 atagtggtttttaaaaattgatgtttacgtttttttaattacatccctatgtaaaaatatgtttttggttttagtccctctacttaatccagttggcaac 39872017  T
Q  260 tgtt 263  Q
    ||||    
T  39872018 tgtt 39872021  T

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Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 162 - 263
Target Start/End: Original strand, 3026656 - 3026757
Alignment:
Q  162 agtggtttttaaaaattgatgtttacgnnnnnnnaattacatccctatgtaaaaatatgtttttggttttagtccctctacttaactcagttggcaactg 261  Q
    |||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  3026656 agtggtttttaaaaattgatgtttacgtttttttaattacatccctatgtaaaaatatgtttttggttttagtccctctacttaatccagttggcaactg 3026755  T
Q  262 tt 263  Q
    ||    
T  3026756 tt 3026757  T

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Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 196 - 257
Target Start/End: Original strand, 25529726 - 25529787
Alignment:
Q  196 aattacatccctatgtaaaaatatgtttttggttttagtccctctacttaactcagttggca 257  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  25529726 aattacatccctgtgtaaaaatatgtttttggttttagtccctctacttaacccagttggca 25529787  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 196 - 246
Target Start/End: Complemental strand, 39870694 - 39870644
Alignment:
Q  196 aattacatccctatgtaaaaatatgtttttggttttagtccctctacttaa 246  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||| ||||    
T  39870694 aattacatccctatgtaaaaatacgtttttgattttagtccctctaattaa 39870644  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 82 - 113
Target Start/End: Original strand, 39871840 - 39871871
Alignment:
Q  82 gaagccaacttggtatggtttatgttttaact 113  Q
    ||||||||||||||||||||||||||||||||    
T  39871840 gaagccaacttggtatggtttatgttttaact 39871871  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 243
Target Start/End: Complemental strand, 3149496 - 3149456
Alignment:
Q  203 tccctatgtaaaaatatgtttttggttttagtccctctact 243  Q
    |||||||||||||||  || |||||||||||||||||||||    
T  3149496 tccctatgtaaaaatgcgtctttggttttagtccctctact 3149456  T

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Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 160 - 263
Target Start/End: Original strand, 35382824 - 35382928
Alignment:
Q  160 atagtggtttttaaaaattgatgtttacgnnnnnnn-aattacatccctatgtaaaaatatgtttttggttttagtccctctacttaactcagttggcaa 258  Q
    |||||||||||||||||||||||||||||        |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  35382824 atagtggtttttaaaaattgatgtttacgttttttttaattacatccctatgtaaaaatatgtatttggttttagtccctctacttaacccagttggcaa 35382923  T
Q  259 ctgtt 263  Q
    |||||    
T  35382924 ctgtt 35382928  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 172 - 257
Target Start/End: Original strand, 32849713 - 32849798
Alignment:
Q  172 aaaaattgatgtttacgnnnnnnnaattacatccctatgtaaaaatatgtttttggttttagtccctctacttaactcagttggca 257  Q
    |||||||||||||||||       |||||||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||    
T  32849713 aaaaattgatgtttacgtttttttaattacatccctgtgtaaaaatacgtttttggttttagtccctctacttaacccagttggca 32849798  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 196 - 254
Target Start/End: Complemental strand, 11429477 - 11429419
Alignment:
Q  196 aattacatccctatgtaaaaatatgtttttggttttagtccctctacttaactcagttg 254  Q
    |||||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||    
T  11429477 aattacatccctgtgtaaaaatacgtttttggttttagtccctctacttaacccagttg 11429419  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 257
Target Start/End: Original strand, 11431137 - 11431198
Alignment:
Q  196 aattacatccctatgtaaaaatatgtttttggttttagtccctctacttaactcagttggca 257  Q
    |||||||||||| |||||||||   |||||||||||||||| |||||||||| |||||||||    
T  11431137 aattacatccctgtgtaaaaattcttttttggttttagtccttctacttaacccagttggca 11431198  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 196 - 246
Target Start/End: Complemental strand, 35381625 - 35381575
Alignment:
Q  196 aattacatccctatgtaaaaatatgtttttggttttagtccctctacttaa 246  Q
    ||||||||||||||||||||||| ||||||| |||||||| ||||| ||||    
T  35381625 aattacatccctatgtaaaaatacgtttttgcttttagtctctctaattaa 35381575  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 203 - 243
Target Start/End: Complemental strand, 13223151 - 13223111
Alignment:
Q  203 tccctatgtaaaaatatgtttttggttttagtccctctact 243  Q
    |||||||||||||||  ||||||||||||||||||||||||    
T  13223151 tccctatgtaaaaatgcgtttttggttttagtccctctact 13223111  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 203 - 243
Target Start/End: Original strand, 13229095 - 13229135
Alignment:
Q  203 tccctatgtaaaaatatgtttttggttttagtccctctact 243  Q
    ||||||||||||||| ||||||| |||||||||||||||||    
T  13229095 tccctatgtaaaaatgtgtttttcgttttagtccctctact 13229135  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 257
Target Start/End: Complemental strand, 32848064 - 32848004
Alignment:
Q  197 attacatccctatgtaaaaatatgtttttggttttagtccctctacttaactcagttggca 257  Q
    ||||||||| | |||||||||   |||||||||||||||| |||||||||| |||||||||    
T  32848064 attacatccttgtgtaaaaattcttttttggttttagtccttctacttaacccagttggca 32848004  T

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Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 172 - 257
Target Start/End: Original strand, 37556316 - 37556401
Alignment:
Q  172 aaaaattgatgtttacgnnnnnnnaattacatccctatgtaaaaatatgtttttggttttagtccctctacttaactcagttggca 257  Q
    |||||||||||||||||       |||||||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||    
T  37556316 aaaaattgatgtttacgtttttttaattacatccctgtgtaaaaatacgtttttggttttagtccctctacttaacccagttggca 37556401  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 260
Target Start/End: Complemental strand, 30046020 - 30045963
Alignment:
Q  203 tccctatgtaaaaatatgtttttggttttagtccctctacttaactcagttggcaact 260  Q
    |||||||||||||||| |||||||||||||||||||||||| |  | |||||||||||    
T  30046020 tccctatgtaaaaatacgtttttggttttagtccctctactaagattagttggcaact 30045963  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 203 - 243
Target Start/End: Original strand, 38758142 - 38758182
Alignment:
Q  203 tccctatgtaaaaatatgtttttggttttagtccctctact 243  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  38758142 tccctatgtaaaaatgtgtttttggttttagtccctctact 38758182  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 203 - 243
Target Start/End: Complemental strand, 38756898 - 38756858
Alignment:
Q  203 tccctatgtaaaaatatgtttttggttttagtccctctact 243  Q
    ||||||||||||||| ||||||| |||||||||||||||||    
T  38756898 tccctatgtaaaaatgtgtttttcgttttagtccctctact 38756858  T

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Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 196 - 257
Target Start/End: Complemental strand, 41282125 - 41282064
Alignment:
Q  196 aattacatccctatgtaaaaatatgtttttggttttagtccctctacttaactcagttggca 257  Q
    |||||||||||| |||||||||| ||||||||||||||||||| |||||||| |||||||||    
T  41282125 aattacatccctgtgtaaaaatacgtttttggttttagtccctgtacttaacccagttggca 41282064  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 243
Target Start/End: Original strand, 33489724 - 33489764
Alignment:
Q  203 tccctatgtaaaaatatgtttttggttttagtccctctact 243  Q
    |||||||||||||||  ||||||||| ||||||||||||||    
T  33489724 tccctatgtaaaaatgcgtttttggtattagtccctctact 33489764  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 260
Target Start/End: Complemental strand, 11148584 - 11148527
Alignment:
Q  203 tccctatgtaaaaatatgtttttggttttagtccctctacttaactcagttggcaact 260  Q
    ||||||||||||||| ||||||||||||||||||||||||| |  ||||||| |||||    
T  11148584 tccctatgtaaaaatgtgtttttggttttagtccctctactaagatcagttgccaact 11148527  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 243
Target Start/End: Complemental strand, 34538364 - 34538324
Alignment:
Q  203 tccctatgtaaaaatatgtttttggttttagtccctctact 243  Q
    |||||||||||||||  |||||| |||||||||||||||||    
T  34538364 tccctatgtaaaaatgcgtttttcgttttagtccctctact 34538324  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 196 - 245
Target Start/End: Complemental strand, 9261712 - 9261663
Alignment:
Q  196 aattacatccctatgtaaaaatatgtttttggttttagtccctctactta 245  Q
    |||||||| | | |||||||||| ||||||||||||||||| ||||||||    
T  9261712 aattacatacttttgtaaaaatacgtttttggttttagtccgtctactta 9261663  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 243
Target Start/End: Original strand, 28167151 - 28167191
Alignment:
Q  203 tccctatgtaaaaatatgtttttggttttagtccctctact 243  Q
    |||||||||||||||  ||||||| ||||||||||||||||    
T  28167151 tccctatgtaaaaatgcgtttttgattttagtccctctact 28167191  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 243
Target Start/End: Complemental strand, 44904766 - 44904726
Alignment:
Q  203 tccctatgtaaaaatatgtttttggttttagtccctctact 243  Q
    ||||||||||||||| |||||||  ||||||||||||||||    
T  44904766 tccctatgtaaaaatgtgtttttcattttagtccctctact 44904726  T

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