View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1086_low_1 (Length: 611)
Name: NF1086_low_1
Description: NF1086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1086_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 328; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 184 - 532
Target Start/End: Original strand, 27603602 - 27603954
Alignment:
| Q |
184 |
tttgagattggtaactaactagtcaaatggattttagaggccacggagctccttttcatatattgacataatcgcatgt----atgaatacatatatgta |
279 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
27603602 |
tttgagattggtaactaactagtcaaatggattttagaggccatggagctccttttcatatattgacataatcgcatgtatgtatgaatacatatatgta |
27603701 |
T |
|
| Q |
280 |
tacagcataaatatgaagttaaaagcaatataacaggggagggggtatttactgtcagtataaatgctccgttttaagcttgttctctcattccatgtca |
379 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
27603702 |
tacagcataaatatgaagttaaaagcaatataacaggggagggggtatttactgtcagtataaatgctccgttttaagcttgttctctctttccatgtca |
27603801 |
T |
|
| Q |
380 |
taggtcaatcaccttggctgcacccccagggcatcttcccgattttaaaatgttggctctgtttggatgtggggcttttcttttgagaggtgctgggtgt |
479 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27603802 |
taggtcaatcaccttggctgcacccccagggcatcttcccgattttaaaatgttggctctgtttggatgtggggcttttcttttgagaggtgctgggtgt |
27603901 |
T |
|
| Q |
480 |
actattaatgatctcattgatcgggatattgatacaaaggtaaatgtcattgc |
532 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27603902 |
actattaatgatctcattgatcgggatattgatacaaaggtaaatgtcattgc |
27603954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 67 - 150
Target Start/End: Original strand, 27603528 - 27603611
Alignment:
| Q |
67 |
acatatttatgggtaaatgttttcactttgacaagaacatagagaatttaacaactttattgataagaaaatggtttgtgattg |
150 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
27603528 |
acatatttatgggtaaatgttttcaccatgacaagaacgtagagaatttaacaactttattgataagaaaatggtttgagattg |
27603611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 540 - 578
Target Start/End: Original strand, 27604397 - 27604435
Alignment:
| Q |
540 |
ggttgctgtcttttttgtgtatattgttattcctatgat |
578 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
27604397 |
ggttgctgtcttttttgtgtttattgttattcctatgat |
27604435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 119 - 532
Target Start/End: Complemental strand, 52210805 - 52210382
Alignment:
| Q |
119 |
aactttattgataagaaaatggtttgtgattgaaatatgttgtcgttagtagctatgtttacacctttgagattggtaactaactagtcaaatggatttt |
218 |
Q |
| |
|
||||| ||||||| ||||||| || |||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52210805 |
aacttcattgatatgaaaatgattagtgattgaaatatgttgtagatagtagctatgtttagacctttgagattggtaactaactagtcaaatggatttt |
52210706 |
T |
|
| Q |
219 |
agaggccacggagctccttttcatatattgacataatcgcatgtatgaatacatatatgtatacagcataaatatgaagttaaaagcaatata------- |
311 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
52210705 |
agaggccatggagctccttttcatacattgacataatcgcatgtatgaatacatatttgtatacaacataaatatgaagttaaaagcaatatactttttt |
52210606 |
T |
|
| Q |
312 |
------acaggggagggggtatttactgtcagtataaatgctccgttttaagcttgttctctcattccatgtcataggtcaatcaccttggctgcacccc |
405 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
52210605 |
cctataacagaggagggggtatttactgtcagtataaatgctccattttaagcttgttctctctttccatgtcataggtcaatcaccttggctgcacccc |
52210506 |
T |
|
| Q |
406 |
cagggcatcttcccgattttaaaatgttggctctgtttggatgtggggcttttcttttgagaggtgctgggtgtactattaatgatctcattgatcggga |
505 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
52210505 |
cagggcatcttcccgattttaaaatgttggctctgtttggatgcggggcttttcttttgagaggtgctgggtg---tattaatgttctcattgatcggga |
52210409 |
T |
|
| Q |
506 |
tattgatacaaaggtaaatgtcattgc |
532 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
52210408 |
tattgatacaaaggtaaatgtcattgc |
52210382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 7 - 35
Target Start/End: Original strand, 50419784 - 50419812
Alignment:
| Q |
7 |
ctccatataatattcaccttcactgtggc |
35 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
50419784 |
ctccatataatattcaccttcactgtggc |
50419812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University