View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1086_low_10 (Length: 368)
Name: NF1086_low_10
Description: NF1086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1086_low_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 2 - 302
Target Start/End: Complemental strand, 3809989 - 3809689
Alignment:
| Q |
2 |
tcggtgtggctcctcctcttccgaatgcaaatagtaattggttttattttttgtaatgtagaaccatttctcatagataaacacagtattgtgcatggaa |
101 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
3809989 |
tcggtgtggctcctcctcttccgaattcaaatagtaattggttttattttttgtaatatagaaccatttctcatcgataaacacagtattgtgcatggaa |
3809890 |
T |
|
| Q |
102 |
gtaaacttcggatcatgaggcgagctgttacggtcgagcattgacaaacaaaaccttaaacgagcaatcatattttcctcttttaaatatggcttaagtg |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3809889 |
gtaaacttcggatcatgaggcgagctgttacggtcgagcattgacaaacaaaaccttaaacgagcaatcatattttcctcttttaaatatggcttaagtg |
3809790 |
T |
|
| Q |
202 |
tacttgaatggcgtcgtataactccggacttttgcagccttatcaatgatgtcttaggaattttcagagcaagagatagagatcgaaaggtagatcgttt |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3809789 |
tacttgaatggcgtcgtataactccggacttttgcagccttatcaatgatgtcttaggaattttcagagcaagagatagagatcgaaaggtagatcgttt |
3809690 |
T |
|
| Q |
302 |
t |
302 |
Q |
| |
|
| |
|
|
| T |
3809689 |
t |
3809689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University