View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1086_low_16 (Length: 293)
Name: NF1086_low_16
Description: NF1086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1086_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 50 - 243
Target Start/End: Complemental strand, 51022878 - 51022685
Alignment:
| Q |
50 |
agtcatccttagccttggttgtgatctcaccaaagaccataaccaagttagtcttggtgcaagtttcacaagcaaccttgctgtctacgtcctgttcaag |
149 |
Q |
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| T |
51022878 |
agtcaaccttagccttggttgtgatctcaccaaagaccataaccaagttagtcttggtgcaagtttcacaagcaaccttgctgtctacgtcctgttcaag |
51022779 |
T |
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| Q |
150 |
gcaagcatctagcacagcatcagagatttgatcacaaagcttgtcggggtgtccctcattcacggactcagaggtaaataggaaggtctctgct |
243 |
Q |
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| T |
51022778 |
gcaagcatctagcacagcatcagagatttgatcacagagcttgtcagggtgtccctcattcacggactcagaggtaaataggaaggtctctgct |
51022685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 67 - 221
Target Start/End: Original strand, 20526065 - 20526219
Alignment:
| Q |
67 |
gttgtgatctcaccaaagaccataaccaagttagtcttggtgcaagtttcacaagcaaccttgctgtctacgtcctgttcaaggcaagcatctagcacag |
166 |
Q |
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| T |
20526065 |
gttgtgatctcaccaaagaccataaccatgttggtctttgtgcaagtttcacatgcaactttgctgtctggatcttgctcgaggcaagcatctagaacgg |
20526164 |
T |
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| Q |
167 |
catcagagatttgatcacaaagcttgtcggggtgtccctcattcacggactcaga |
221 |
Q |
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| T |
20526165 |
catcagagatctggtcgcaaagcttgtcggggtgtccctcgttcacagattcaga |
20526219 |
T |
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Target: chr7 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 61 - 236
Target Start/End: Complemental strand, 45207863 - 45207688
Alignment:
| Q |
61 |
gccttggttgtgatctcaccaaagaccataaccaagttagtcttggtgcaagtttcacaagcaaccttgctgtctacgtcctgttcaaggcaagcatcta |
160 |
Q |
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| T |
45207863 |
gccttggttgttatttctccaaagaccatgaccatgttagtcttggtgcaagtctcacaggcaaccttgctgtcaggatcctgttcaagacaggcatcga |
45207764 |
T |
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| Q |
161 |
gcacagcatcagagatttgatcacaaagcttgtcggggtgtccctcattcacggactcagaggtaaataggaaggt |
236 |
Q |
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| T |
45207763 |
gcactgcatcagagatctggtcgcacagcttgtcggggtgaccctcgttcactgattcagatgtaaatagaaaggt |
45207688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 59 - 128
Target Start/End: Complemental strand, 41212965 - 41212896
Alignment:
| Q |
59 |
tagccttggttgtgatctcaccaaagaccataaccaagttagtcttggtgcaagtttcacaagcaacctt |
128 |
Q |
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| T |
41212965 |
tagccttggttgttatctcaccaaagaccataaccatgttagtctttgtacatgtctcacatgcaacctt |
41212896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 131
Target Start/End: Original strand, 27718947 - 27719022
Alignment:
| Q |
56 |
ccttagccttggttgtgatctcaccaaagaccataaccaagttagtcttggtgcaagtttcacaagcaaccttgct |
131 |
Q |
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| T |
27718947 |
cctttgccttggttgtgatttcaccaaagaccataaccatgttagtttttgtacaggtctcgcaggcaaccttgct |
27719022 |
T |
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