View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1086_low_19 (Length: 253)

Name: NF1086_low_19
Description: NF1086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1086_low_19
NF1086_low_19
[»] chr3 (2 HSPs)
chr3 (1-97)||(39872200-39872296)
chr3 (175-239)||(39872374-39872438)
[»] chr5 (1 HSPs)
chr5 (59-95)||(22650266-22650302)


Alignment Details
Target: chr3 (Bit Score: 77; Significance: 8e-36; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 39872200 - 39872296
Alignment:
Q  1 taagccaagattttatttgaatcctctcattctctcattgtccctccttccactaatatatctatctctttttaaatattatagagaagatcaagag 97  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||| |||||||||||||||||||||| |||||||||||||||    
T  39872200 taagccaagattttatttgaatcctctcattctctcattcttcctccttccactgatacatctatctctttttaaatattagagagaagatcaagag 39872296  T

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Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 175 - 239
Target Start/End: Original strand, 39872374 - 39872438
Alignment:
Q  175 gatattaaattacctaatttttgctaataactaattatactaggaaacttaaccggccctttagt 239  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  39872374 gatattaaattacctattttttgctaataactaattatactaggaaacttaaccggccctttagt 39872438  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 95
Target Start/End: Original strand, 22650266 - 22650302
Alignment:
Q  59 tatctatctctttttaaatattatagagaagatcaag 95  Q
    ||||||||||||| ||||||||| |||||||||||||    
T  22650266 tatctatctctttataaatattagagagaagatcaag 22650302  T

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