View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1086_low_2 (Length: 505)
Name: NF1086_low_2
Description: NF1086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1086_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 37 - 463
Target Start/End: Complemental strand, 11065271 - 11064845
Alignment:
| Q |
37 |
agaaaaggaaaaattataagcacttcttttgagtacagtgctctaaattgtagggcacatagtgtttcattgaaggattttggtggtgttggagatggaa |
136 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11065271 |
agaaaaggaaaaattataagtacttcttttgagtacagtgctctaaattgtagggcacatagtgtttcattgaaggattttggtggtgttggagatggaa |
11065172 |
T |
|
| Q |
137 |
aaacatcaaacacaaaggcttttaaatctgcaataagttatttgagtcagaatgcttctgaaggagggtctcaattgtatgttcctgctggaaaatggct |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11065171 |
aaacatcaaacacaaaggcttttaaatctgcaataagtcatttgagtcagaatgcttctgaaggagggtctcaattgtatgttcctgctggaaaatggct |
11065072 |
T |
|
| Q |
237 |
tactgggagctttagtcttataagtcacttcactctttatctacacaaagatgctgttcttcttgcttctcaggtatttgtactcttatttatgttcttt |
336 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11065071 |
tactgggagctttagtcttataagtcacttcactctttatctacacaaagatgctgttcttcttgcttctcaggtatttgtactcttatttatgttcttt |
11064972 |
T |
|
| Q |
337 |
gtttgataattaagtaaccttaaattgagatccaatgcctggtttataattcattttgtgaattttctttcacccatattgattactaagtaaccaaaaa |
436 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11064971 |
gtttgataattaagtaaccttaaattgagatccaatgcctggtttacaattcattttgtgaattttctttcacccatattgattactaagtaaccaaaaa |
11064872 |
T |
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| Q |
437 |
tatcaattttttatccctgaaattgac |
463 |
Q |
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| T |
11064871 |
tatcaattttttatccctgaaattgac |
11064845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 97; Significance: 2e-47; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 37 - 313
Target Start/End: Original strand, 29762798 - 29763074
Alignment:
| Q |
37 |
agaaaaggaaaaattataagcacttcttttgagtacagtgctctaaattgtagggcacatagtgtttcattgaaggattttggtggtgttggagatggaa |
136 |
Q |
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||||||| ||||||| | | ||||| |||| ||||| || | |||||||||| |||||||||| |||||||| ||||||||||||||||||||||||| |
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| T |
29762798 |
agaaaagcaaaaattgtgacaacttcatttgtgtacaatggtataaattgtagagcacatagtgcttcattgacagattttggtggtgttggagatggaa |
29762897 |
T |
|
| Q |
137 |
aaacatcaaacacaaaggcttttaaatctgcaataagttatttgagtcagaatgcttctgaaggagggtctcaattgtatgttcctgctggaaaatggct |
236 |
Q |
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| ||||| || |||||||||||| | |||||||| ||| | |||||||| ||| |||| |||| || ||||| |||||||||| || ||||||||||| |
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| T |
29762898 |
atacatctaatacaaaggcttttcagtctgcaattagtcacctgagtcagtatggttctcaaggtggttctcagctgtatgttccagcaggaaaatggct |
29762997 |
T |
|
| Q |
237 |
tactgggagctttagtcttataagtcacttcactctttatctacacaaagatgctgttcttcttgcttctcaggtat |
313 |
Q |
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||||| || |||||||||| |||||||| ||||| ||| | | | |||||||||||| |||||||||||||||| |
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| T |
29762998 |
cactggtagttttagtcttactagtcactttactctctatttggatagagatgctgttctccttgcttctcaggtat |
29763074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 112 - 172
Target Start/End: Complemental strand, 34506138 - 34506078
Alignment:
| Q |
112 |
gattttggtggtgttggagatggaaaaacatcaaacacaaaggcttttaaatctgcaataa |
172 |
Q |
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||||||||||||||||| ||||||||||| || |||||||| |||||||| ||||||||| |
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| T |
34506138 |
gattttggtggtgttggtgatggaaaaacctctaacacaaaagcttttaatactgcaataa |
34506078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 172
Target Start/End: Complemental strand, 45076342 - 45076282
Alignment:
| Q |
112 |
gattttggtggtgttggagatggaaaaacatcaaacacaaaggcttttaaatctgcaataa |
172 |
Q |
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||||||||||||||||| ||||||||||| ||||||||||| ||||| || ||||||| |
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| T |
45076342 |
gattttggtggtgttggtgatggaaaaacccttaacacaaaggcatttaattcagcaataa |
45076282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 229 - 313
Target Start/End: Complemental strand, 45083640 - 45083556
Alignment:
| Q |
229 |
aaatggcttactgggagctttagtcttataagtcacttcactctttatctacacaaagatgctgttcttcttgcttctcaggtat |
313 |
Q |
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|||||||| ||||| ||||| | ||| | ||| || |||||||||| ||| || ||||||||||| ||||||| |||||||||| |
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| T |
45083640 |
aaatggctaactggaagcttcaatctcacaagccatttcactctttttctccaaaaagatgctgtcattcttgcatctcaggtat |
45083556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 172
Target Start/End: Complemental strand, 45083757 - 45083697
Alignment:
| Q |
112 |
gattttggtggtgttggagatggaaaaacatcaaacacaaaggcttttaaatctgcaataa |
172 |
Q |
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||||||||||||||||| ||||||||||| ||||||||||| ||||| || ||||||| |
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| T |
45083757 |
gattttggtggtgttggtgatggaaaaacccttaacacaaaggcatttaattcagcaataa |
45083697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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